1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatatttgattaggtagtaaggtagactcacatctggcctagcctatcacatttgcaacttcgacacataacctgttgcttatatctgttacgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATGCAGAATTGCAGAAGAAGCAG
species | Zea mays |
transcript | GRMZM2G157722_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|78117177|gb|DV535564.1|DV535564
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGACCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|93282472|gb|EB674736.1|EB674736
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|149072702|gb|EE160938.2|EE160938
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTTTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|71438068|gb|DR819118.1|DR819118
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTEST: gi|76283483|gb|DV023051.1|DV023051
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|88753387|gb|DY537528.1|DY537528
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|101385967|gb|EB815030.1|EB815030
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|71314118|gb|DR793675.1|DR793675
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|86470887|gb|DY237257.1|DY237257
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATEST: gi|71439337|gb|DR820387.1|DR820387
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAGGTTCAGAAACTGAAGGAACAAAATEST: gi|149113009|gb|EE295786.2|EE295786
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
EST: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
genomic: GGATGATCAAGAACAGGGAGTCTGCAGCTAGATCCCGTGCCCGTAAGCAGgtcacaccct ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
atcacatttgcaacttcgacacataacctgttgcttatatctgttacgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATGCAGAATTGCAGAAGAAGCAG
acataac putative branch site (score: 147)
ttatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatttgattaggtagtaaggtagactcacatctggcctagcctatcacatttgcaacttcgacacataacctgttgcttatatctgttacgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATGCAGAATTGCAGAAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc