Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttgtacatatcattgacttttgcaaattccattttcttattaaaatatacaattaagagtcgtgcttcttaccttaaactggtttgggtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAAAGGTCAATCAATGGATGACATGAGTGAGGGTTTGCTGGAAGACTGTGCG

Basic information

species Zea mays
transcript GRMZM2G157332_T07
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157332_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g13440.1 (Oryza sativa), 3'ss of exon 2
cttttgtacatatcattgactt-ttgcaaattccattttcttattaaaatatacaattaaga-gtcgtgcttcttaccttaa-actggtttgggtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAAAGGTCAATCAATGGATGACATGAGTGAGGGTTTGCTGGAAGACTGTGCG
   || || ||||  ||  ||  ||||  | |  | ||  | |    |  | | | | |     || |||||  || || ||  ||  | |   |||  |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||  ||||||||||||| ||||| ||| |||| ||||| ||||| 
--attttagatatggtttgctcattgcttaataaagttgttgaa-gtagcacagagtcatcttatcatgctttgtagctcaacgctattgttcttgaacacagGTTCCATGTAGATAAGATGTCCTCTGCACACGTGTATTTGAGATTAAATAAAGGTCAGACAATGGATGACATAAGTGAAGGTGTGCTTGAAGATTGTGCC

upper sequence: GRMZM2G157332_T07 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G08530.3 (Glycine max), 3'ss of exon 2
cttttgtacatatcattgacttttgcaaattccattttcttattaaaatatacaattaagagtcgtgcttcttaccttaa--actggtttgggtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAAAGGTCAATCAATGGATGACATGAGTGAGGGTTTGCTGGAAGACTGTGCG
      || || ||  |    ||||    ||    ||   || |   ||    | ||  |  |  |      | | ||||  |     |      |||  ||||||||||| ||||| ||||| || || ||||| ||||| || ||| | ||||| ||  | || |||||||||||||||||||| |||||||||||||| 
--gcattatatttcggtttgatttgatgcttttgcttagatagttgtattgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT

upper sequence: GRMZM2G157332_T07 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0008g03810.t01 (Vitis vinifera), 3'ss of exon 1
cttttgtacatatcattgacttttgcaaattccattttcttattaaaatatacaattaagagtcgtgcttcttacctta-aactggtttgggtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAAAGGTCAATCAATGGATGACATGAGTGAGGGTTTGCTGGAAGACTGTGCG
 | |  ||  | | | | |    |||  | |   |||| || || |  |  |   ||     ||   |      | |||     ||  |   | ||  |||||| ||||| |||||||||||||| || ||||| ||||| |||||| | || |||||  |||| ||||| || ||||| ||||| ||||| || ||||| 
ttctcttaagtttgaatcatgcatgcttagttttttttttttttcagttccatg-ttttctttcagtcaaagagcgttatggaagggcttatttatcgcagGTTTCATGTGGATAAGATGTCCTCAGCCCATGTTTATGTAAGATTGCACAAGGGTCAGACAATTGATGATATAAGTGAAGGTTTACTGGAGGATTGTGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211488033|gb|FK946171.1|FK946171
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488026|gb|FK946164.1|FK946164
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499572|gb|FK946225.1|FK946225
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGT
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGT
EST: gi|211488024|gb|FK946162.1|FK946162
EST:     AGTACGAGAACGAGGACCTCATCAAATACGGCTTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AGTACGAGAACGAGGACCTCATCAAATACGGCTT-CCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488032|gb|FK946170.1|FK946170
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496690|gb|FK946214.1|FK946214
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065915|gb|FK946244.1|FK946244
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499571|gb|FK946224.1|FK946224
EST:     AAGTACGAGAACTAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496686|gb|FK946210.1|FK946210
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065908|gb|FK946237.1|FK946237
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065910|gb|FK946239.1|FK946239
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTWGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493804|gb|FK946202.1|FK946202
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATGAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490914|gb|FK946183.1|FK946183
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499583|gb|FK946236.1|FK946236
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|32824357|gb|CD964079.1|CD964079
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065911|gb|FK946240.1|FK946240
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499580|gb|FK946233.1|FK946233
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493800|gb|FK946198.1|FK946198
EST:     AAGTACGAGAACGAGGACCTCMTCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATSAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485145|gb|FK946154.1|FK946154
EST:     AAGTA-GA-A-CGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065916|gb|FK946245.1|FK946245
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496684|gb|FK946208.1|FK946208
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATTAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496687|gb|FK946211.1|FK946211
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493803|gb|FK946201.1|FK946201
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485144|gb|FK946153.1|FK946153
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488035|gb|FK946173.1|FK946173
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065919|gb|FK946248.1|FK946248
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490909|gb|FK946178.1|FK946178
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488036|gb|FK946174.1|FK946174
EST:     AAGTACGAGAACGAGGAC-TCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGAT
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGAT
EST: gi|211488025|gb|FK946163.1|FK946163
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493801|gb|FK946199.1|FK946199
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485142|gb|FK946151.1|FK946151
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGAYTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488027|gb|FK946165.1|FK946165
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485140|gb|FK946149.1|FK946149
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496689|gb|FK946213.1|FK946213
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065914|gb|FK946243.1|FK946243
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485141|gb|FK946150.1|FK946150
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499578|gb|FK946231.1|FK946231
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490920|gb|FK946189.1|FK946189
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCC-AGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496694|gb|FK946218.1|FK946218
EST:     AAGTACGARAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATA-GATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493798|gb|FK946196.1|FK946196
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065917|gb|FK946246.1|FK946246
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065918|gb|FK946247.1|FK946247
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|32832790|gb|CD972468.1|CD972468
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211065920|gb|FK946249.1|FK946249
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499569|gb|FK946222.1|FK946222
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496697|gb|FK946221.1|FK946221
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499579|gb|FK946232.1|FK946232
EST:     AAGTACGARAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGAATNAGATGTCCTCTGCACATGTGTATG
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGA-TAAGATGTCCTCTGCACATGTGTATG
EST: gi|211488037|gb|FK946175.1|FK946175
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGMAAATGTGTATGTGAGATYGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490922|gb|FK946191.1|FK946191
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493795|gb|FK946193.1|FK946193
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATTAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488034|gb|FK946172.1|FK946172
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490916|gb|FK946185.1|FK946185
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499576|gb|FK946229.1|FK946229
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485150|gb|FK946159.1|FK946159
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488030|gb|FK946168.1|FK946168
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496692|gb|FK946216.1|FK946216
EST:     AAGTWCGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490919|gb|FK946188.1|FK946188
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496695|gb|FK946219.1|FK946219
EST:     AGTTWCGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTG
genomic: AGTA-CGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTG
EST: gi|211488031|gb|FK946169.1|FK946169
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|71429878|gb|DR810928.1|DR810928
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485151|gb|FK946160.1|FK946160
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493807|gb|FK946205.1|FK946205
EST:     AAGTWCGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493799|gb|FK946197.1|FK946197
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499570|gb|FK946223.1|FK946223
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCC-AGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499574|gb|FK946227.1|FK946227
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490908|gb|FK946177.1|FK946177
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496691|gb|FK946215.1|FK946215
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485148|gb|FK946157.1|FK946157
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499573|gb|FK946226.1|FK946226
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGSACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490915|gb|FK946184.1|FK946184
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATTTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499575|gb|FK946228.1|FK946228
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488028|gb|FK946166.1|FK946166
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211485139|gb|FK946148.1|FK946148
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATA-GATGTCCTCTGCACATGTGTA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTA
EST: gi|211493802|gb|FK946200.1|FK946200
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211496685|gb|FK946209.1|FK946209
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211493806|gb|FK946204.1|FK946204
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211490917|gb|FK946186.1|FK946186
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGA
EST: gi|211493796|gb|FK946194.1|FK946194
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211499582|gb|FK946235.1|FK946235
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATNAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
EST: gi|211488029|gb|FK946167.1|FK946167
EST:     AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTG                         GTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA
genomic: AAGTACGAGAACGAGGACCTCATCAAATACGGCTTCCCCGAGGACATCTGgtaacctcat ... gtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatacaattaagagtcgtgcttcttaccttaaactggtttgggtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAAAGGTCAATCAATGGATGACATGAGTGAGGGTTTGCTGGAAGACTGTGCG
                       ttcttac  putative branch site (score: 2)
     tacaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttttgtacatatcattgacttttgcaaattccattttcttattaaaatatacaattaagagtcgtgcttcttaccttaaactggtttgggtgattacagGTTCCATGTAGATAAGATGTCCTCTGCACATGTGTATGTGAGATTGAATAAAGGTCAATCAATGGATGACATGAGTGAGGGTTTGCTGGAAGACTGTGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA