Sequence
atgc intronic sequence ATGC exonic sequence...tcgttatttttattgcacatgcttatcattacatgtactaaaactgatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G157332_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g13440.1 (Oryza sativa), 3'ss of exon 4
-tcgttatttttattgcacatgcttat-cattacatgtactaaaactgatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGG
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attactggacacagcccaataacttaggtcctagatgtatctc--cttttgaatgatcttttcagtttttttatgtatcctttgtcatttgttcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG
upper sequence: GRMZM2G157332_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G08530.3 (Glycine max), 3'ss of exon 4
---------------------------------------------------tcgttattttt-attgcacatgcttatcattacat-gtactaaaactgatgaataat--agcttcgactataatatctgtaactcatccttttctttt-ttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGG
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gtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGG
ctgtaac putative branch site (score: 3)
taactcatccttttct CT-rich tract
tataatatctgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcgttatttttattgcacatgcttatcattacatgtactaaaactgatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA