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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacgctaccgcccctagatcgctggaattttgcgtctctagcagctcgtgcttgtacagttttctgatcgaggcggcactgatgccgtttccccttttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA

Basic information

species Zea mays
transcript GRMZM2G157316_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157316_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g16330.1 (Oryza sativa), 3'ss of exon 1
gtaagacgctaccgcccctagatcgctggaattttgc--gtctcta----gcagctcgtgcttgtacagttt---tctgatcgagg---cggcactgat------gccgtttcccctt--ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA
||||| |||  || |||      | ||   |||| ||  |  || |    | |  ||   |  ||  | |      |||| ||      ||||  |  |      |   |||| | ||  |||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||  ||||
gtaag-cgccgcctccctccccccactcagatttcgccggaatcgagaccggaattccgccccgtttactccgtgcctgaccgcctccccggcgtttgtttgtttgttttttcgctttggttggttgcagAGAACGCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282775|gb|DV022343.1|DV022343
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|74240575|gb|DT648489.1|DT648489
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|211523741|gb|FL258543.1|FL258543
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|148951838|gb|EC897605.2|EC897605
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71305646|gb|DR788962.1|DR788962
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|78076078|gb|DV504512.1|DV504512
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|93013635|gb|EB639155.1|EB639155
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|211463964|gb|FL402449.1|FL402449
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|76017527|gb|DT944697.1|DT944697
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|93014294|gb|EB639814.1|EB639814
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71305918|gb|DR789090.1|DR789090
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71448463|gb|DR829513.1|DR829513
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|76281436|gb|DV021004.1|DV021004
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71433038|gb|DR814088.1|DR814088
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|76914066|gb|DV165397.1|DV165397
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|211523736|gb|FL258538.1|FL258538
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|149046880|gb|EE048091.2|EE048091
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|74237515|gb|DT645429.1|DT645429
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGACTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|148962075|gb|EE012879.2|EE012879
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|149102614|gb|EE188245.2|EE188245
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|50336165|gb|CO531291.1|CO531291
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|74232244|gb|DT640158.1|DT640158
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|211523737|gb|FL258539.1|FL258539
EST:     CGGACCAGCGGCCTCCGTCTGAAGAATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CGGACCAGCGGCCTCCGTCTGAAG-ATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|148958569|gb|EC904813.2|EC904813
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|89762538|gb|DY690073.1|DY690073
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71450335|gb|DR831385.1|DR831385
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|149080963|gb|EE170059.2|EE170059
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|149105307|gb|EE290799.2|EE290799
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|148999432|gb|EE036384.2|EE036384
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|93013209|gb|EB638729.1|EB638729
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71417992|gb|DR804275.1|DR804275
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|148999920|gb|EE036969.2|EE036969
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|31354976|gb|CD439333.1|CD439333
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|86470247|gb|DY236617.1|DY236617
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCGGGGCGGCGTCTCCGGATTCC                         AAAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71327756|gb|DR800512.1|DR800512
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|76281474|gb|DV021042.1|DV021042
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|89762002|gb|DY689797.1|DY689797
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|211523740|gb|FL258542.1|FL258542
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|71438421|gb|DR819471.1|DR819471
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
EST: gi|149070467|gb|EE158870.2|EE158870
EST:     CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCC                         AGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG
genomic: CCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 101

CCGGGGAGGCTGCCGCGCCTCCTGACCTCGCTTCCGCCTCGCCTCCCCGACCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 83

CCGGGGAGGCTGCCGCGCCTCCTGACCTCGCTTCCGCCTCGCCTCCCCGACCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 166

CCGGGGAGGCTGCCGCGCCTCCTGACCTCGCTTCCGCCTCGCCTCCCCGACCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 125

CCGGGGAGGCTGCCGCGCCTCCTGACCTCGCTTCCGCCTCGCCTCCCCGACCGGACCAGCGGCCTCCGTCTGAAGATGCAGGGCGGCGTCTCCGGATTCCgtaagacgct ... ttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtacagttttctgatcgaggcggcactgatgccgtttccccttttggttccagAGAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCA
                         cactgat  putative branch site (score: 125)
                                    tttccccttttggttc  putative PPT