1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctgtcgccgcctgccctcgccttctgcctcccgacgctcactcggccttgcggatagtatttgcggctcggccccgggcgtgctcagtctcggttccagTGGCCGCTTCGATGTACCTGACCGCCGTTTCCTCCCCCCCACAACCGCCTTCTCGTCTTCATCCCAGAAGCTGCTGCCCAGGTCGGCCGGGGTCGACCGA
species | Zea mays |
transcript | GRMZM2G156333_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gccttgcggatagtatttgcggctcggccccgggcgtgctcagtctcggttccagTGGCCGCTTCGATGTACCTGACCGCCGTTTCCTCCCCCCCACAACCGCCTTCTCGTCTTCATCCCAGAAGCTGCTGCCCAGGTCGGCCGGGGTCGACCGA
atagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtcgccgcctgccctcgccttctgcctcccgacgctcactcggccttgcggatagtatttgcggctcggccccgggcgtgctcagtctcggttccagTGGCCGCTTCGATGTACCTGACCGCCGTTTCCTCCCCCCCACAACCGCCTTCTCGTCTTCATCCCAGAAGCTGCTGCCCAGGTCGGCCGGGGTCGACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-ctgtcgc
- - - - -gcctgcc
- - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - -gccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgct