1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tactggctgcattgttactgtgcaagtgtgcattttaactattaggagttaggacccatcatcctgtagctttaatagtcagctgttatgcatgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGCTGGATATGAGAGGATGACTCGGGTGCAGGAGGCTACTCTGCCAATAATT
species | Zea mays |
transcript | GRMZM2G156158_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG GTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGCEST: gi|211328602|gb|FK972853.1|FK972853
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
EST: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG GTTTGATCAATGTGCCCATTTCTCCACTATCACTGAAAGCCATCAAAGATGEST: gi|211330760|gb|FK972863.1|FK972863
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCC-ATTTCTCCACTGTCACTGAAAGCCATCAAAGATG
EST: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG GTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGCEST: gi|211328605|gb|FK972856.1|FK972856
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
EST: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG GTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
gagttaggacccatcatcctgtagctttaatagtcagctgttatgcatgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGCTGGATATGAGAGGATGACTCGGGTGCAGGAGGCTACTCTGCCAATAATT
ctttaat putative branch site (score: 4)
tttaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactggctgcattgttactgtgcaagtgtgcattttaactattaggagttaggacccatcatcctgtagctttaatagtcagctgttatgcatgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGCTGGATATGAGAGGATGACTCGGGTGCAGGAGGCTACTCTGCCAATAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG