Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaagcaggcaacgcgcgcgagcccagtttccgcgtcctgggctcctggcggcccgcgggggagttcagtaatccttctggggttgttttttttttttttaccggtgactccaaccctatccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGCGACGCCGACTTCTTACTCGAG

Basic information

species Zea mays
transcript GRMZM2G155962_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93284051|gb|EB676315.1|EB676315
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|60397566|gb|DN230382.1|DN230382
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322966|gb|FL249424.1|FL249424
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|20507977|gb|BQ279847.1|BQ279847
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322963|gb|FL249421.1|FL249421
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|21987683|gb|BQ779211.1|BQ779211
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322962|gb|FL249420.1|FL249420
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|101390398|gb|EB817133.1|EB817133
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322965|gb|FL249423.1|FL249423
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322967|gb|FL249425.1|FL249425
EST:     CCTGCAAG-TCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTG-C
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322961|gb|FL249419.1|FL249419
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|26456812|gb|CA828395.1|CA828395
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211322964|gb|FL249422.1|FL249422
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|78090807|gb|DV519181.1|DV519181
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|26558292|gb|CA830527.1|CA830527
EST:     CCTGCAAGG-CATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAG-ACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211320799|gb|FL249416.1|FL249416
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|76909089|gb|DV163217.1|DV163217
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|60357568|gb|DN224541.1|DN224541
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211320798|gb|FL249415.1|FL249415
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211320801|gb|FL249418.1|FL249418
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
EST: gi|211320800|gb|FL249417.1|FL249417
EST:     CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAG                         GCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC
genomic: CCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagc ... atccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctggggttgttttttttttttttaccggtgactccaaccctatccgtgcagGCCAAGGAGGAGTACCCGTACTTCCCAGGCCAGGAACCCACGCTGCGTGGCGACGCCGACTTCTTACTCGAG
                                         ccctatcc  CT-rich tract
          ttgttttttttttttt  TA-rich tract