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...tgaatgtgccttttcaacaaacatttcattcaaccgctgatttctaacatcccgatcatgtgtttttttttttcacctcccgtaatcttgctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTGCTGCAAATTCTATATAGCTCTGTCGCAGCATGGCCTCGGTGGGCGTGG
species | Zea mays |
transcript | GRMZM2G155836_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|71315008|gb|DR794124.1|DR794124
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|149111565|gb|EE190699.2|EE190699
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|89253101|gb|DY624887.1|DY624887
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|211396327|gb|FL436147.1|FL436147
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|76927490|gb|DV171263.1|DV171263
genomic: CGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|211206254|gb|FL246828.1|FL246828
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: AAGCTTTCCGGCGCCGACGCC-ACCGCGGACCCCGC-CCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|148971909|gb|EE022686.2|EE022686
genomic: AAGCTTTCCGGCGCCGACGCCGA-CGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|148932063|gb|EC875411.2|EC875411
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|149009140|gb|EE041278.2|EE041278
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|149078458|gb|EE167238.2|EE167238
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|148961324|gb|EE012052.2|EE012052
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|60401199|gb|DN234006.1|DN234006
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|74234442|gb|DT642356.1|DT642356
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|149095924|gb|EE181586.2|EE181586
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTEST: gi|71446043|gb|DR827093.1|DR827093
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
EST: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCG GTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
genomic: CAAGCTTTCCGGCGCCGACGCCGACGCGGACCCGGCGCCGACACGATCCGgtaatcctct ... ctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGT
aacatcccgatcatgtgtttttttttttcacctcccgtaatcttgctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTGCTGCAAATTCTATATAGCTCTGTCGCAGCATGGCCTCGGTGGGCGTGG
ttctaac putative branch site (score: 11)
tttttttttttcacct putative PPT
atgtgttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgtgccttttcaacaaacatttcattcaaccgctgatttctaacatcccgatcatgtgtttttttttttcacctcccgtaatcttgctctttacagGTGGATCAAGTGCATCACACCTTTAGGGAGGCCCCTTGGACAGCAGTTTGTGCTGCAAATTCTATATAGCTCTGTCGCAGCATGGCCTCGGTGGGCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- aatgtgc
- - - - - - - caacaaa
- - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - -gctgatt
- - - - - - - - - - - - - - - - - - - - - - - -catcccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg