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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttactgcacatttatctctcagttgatatgctgacactattgttattggtctatatgactggttatgccatctgctaaaattatgcccttatgttacagGGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTCTCGTGAACAGTGGGAGAGTCTGTTTTCAGCAAATGGGAAGCTTCGTGAT

Basic information

species Zea mays
transcript GRMZM2G155337_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155337_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g35960.1 (Oryza sativa), 3'ss of exon 1
gttactgcacatttatctctcagttgatatgctgacactat-tgttattggtctatatga--ctggttatgccatctgctaaaattatgcccttatgtt---acagGGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTCTCGTGAACAGTGGGAGAGTCTGTTTTCAGCAAATGGGAAGCTTCGTGAT
           ||  ||| ||||||| ||||       ||| | |||||| || ||||    || |||   |||  | |||||| ||| |  | || ||    ||||||||| || || ||||||||||| ||||||||||||||||||| |||||||||| |||| |||||  |||||||||| || |||||||| |||||||||
------attagttagtctgtcagttggtatggcagtgttatcttttattgatccatatcttccttgttgctccactttctaaaactattctttaatcttctttcagGGGTGGAATAAAGTCTCCATGGTCTCGAAGGAAAAGAAAACGAGTACTTTCTCGTCAACAATGGGAAGGTCTGTTTTCTGCTAATGGGAAACTTCGTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88753704|gb|DY537845.1|DY537845
EST:     CGCCCCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGATCG                         GGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTC
genomic: CGCCCCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGATCGgtgggtttct ... tatgttacagGGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggtctatatgactggttatgccatctgctaaaattatgcccttatgttacagGGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTCTCGTGAACAGTGGGAGAGTCTGTTTTCAGCAAATGGGAAGCTTCGTGAT
                            tgctaaa  putative branch site (score: 2)
                                       tgccctt  putative PPT
                               taaaattat  TA-rich tract