Sequence
atgc intronic sequence ATGC exonic sequencegtaaatcccacaaaaaggcgggtccctttgcccatttcgcctgcctccttttctctgctatggtctcttgttctccgttccttgttttcatattggcctgaggagggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154883_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 3'ss of exon 1
gtaaatcccacaaaaaggcgggtccctttgcccatttcgcctgcctccttttctctgctatggtctcttgttctccgttccttgttttcatattggcctgaggagggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAG
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---------------------------------------------------------------------gttcgtttaggttggatttgggttaggattt--gtgtggcataatgcggtggttggaattgccttcgggagttgtggttgatggtggtgaggtttggcgcagGGACGCGTATGGATTCGCGGTGCGGCCGCAGCATCTGCAGCGTTTCCGCGAGTATGCCAAGATTTACAAG
upper sequence: GRMZM2G154883_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g17540.3 (Oryza sativa), 3'ss of exon 1
gtaaatcccacaaaaaggcgggtccctttgcccat-ttcgcctgcctccttttctctgctatggtctcttgttctc--------cgttccttgttt---tcatattggcctgagga-----gggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAG
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gtaaaacccaataaaaggcgcctccttttcctttcctccgcctccctctcgctagcatttattgtcttgtattgttgcatacgtcgttgttcgtttaggttggatttgggttaggatttgtgtggcataatgcggtggttggaattgccttcgggagttgtggttgatggtggtgaggtttggcgcagGGACGCGTATGGATTCGCGGTGCGGCCGCAGCATCTGCAGCGTTTCCGCGAGTATGCCAAGATTTACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32869190|gb|CF008872.1|CF008872EST: TCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACG GGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGA
genomic: TCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACGgtaaatccca ... tttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAG
ggttgat putative branch site (score: 5)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatcccacaaaaaggcgggtccctttgcccatttcgcctgcctccttttctctgctatggtctcttgttctccgttccttgttttcatattggcctgaggagggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAG
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