Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttaagatatatatttctgctggatgcgcatttttgttgcgaatatatcaggttgtggtttgtccctccataactcactatttttgcccatgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC

Basic information

species Zea mays
transcript GRMZM2G154278_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154278_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 3'ss of exon 1
ggttaagatatatatttctgctggatg-cgcatttttgttgcgaatatatcaggttgtggtttgtccctccataactcactatttttgcc-catgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC
    ||| ||    | |||     |||  |   |  |  |   |||||      ||||      |   ||||  |      |   || || | | ||| ||| ||||| || ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| || ||||| ||||||
--aaaagttacgattctctctcaaatgatgtgatcattgtagaaatatgcatctttgtccaacatatgtccaggaaatttaacccttccctcctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31558163|gb|CD527375.1|CD527375
EST:     GAAGTACTCGTCCCCGCGACCTCGCCGCGCCATACCTCGCTCAAGCTCAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: GAAGTACTCGT-CCCGCGACCTCGCCGCG-CATACCTCGCTCAAGCTCAGgtattcgctc ... atgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211076270|gb|FL148939.1|FL148939
EST:     CAGAAGTACTCGTCCCGCGACCTCGCCGCGCATACCTCGCTCAAGCTCAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTACTCGTCCCGCGACCTCGCCGCGCATACCTCGCTCAAGCTCAGgtattcgctc ... atgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcaggttgtggtttgtccctccataactcactatttttgcccatgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC
                           aactcac  putative branch site (score: 2)
                                actattttt  TA-rich tract