1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagtcgcttacccactgccaactcagcgccatactgttgaattttttttttacctatttctatttatggtgatggtggtggtggtgtgcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGGCGGGTGCGTCGCTTCGTGGAGCGGCGATCGGAGATTGCCGGCGGTCAA
species | Zea mays |
transcript | GRMZM2G153704_T07 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211138131|gb|FL231032.1|FL231032
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211138132|gb|FL231033.1|FL231033
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
tttttttttacctatttctatttatggtgatggtggtggtggtgtgcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGGCGGGTGCGTCGCTTCGTGGAGCGGCGATCGGAGATTGCCGGCGGTCAA
tatttctatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtcgcttacccactgccaactcagcgccatactgttgaattttttttttacctatttctatttatggtgatggtggtggtggtgtgcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGGCGGGTGCGTCGCTTCGTGGAGCGGCGATCGGAGATTGCCGGCGGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT