1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagtcgcttacccactgccaactcagcgccatactgttgaattttttttttacctatttctatttatggtgatggtggtggtggtgtgcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGGCGGGTGCGTCGCTTCGTGGAGCGGCGATCGGAGATTGCCGGCGGTCAA
species | Zea mays |
transcript | GRMZM2G153704_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211504701|gb|FL413777.1|FL413777
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACCCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211506661|gb|FL391682.1|FL391682
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211317026|gb|FL376018.1|FL376018
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211471554|gb|FL402494.1|FL402494
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211441205|gb|FL381373.1|FL381373
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AAACGGAAGCATCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211261095|gb|FL369174.1|FL369174
genomic: AAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211387307|gb|FL389273.1|FL389273
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAGGCCTCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211298858|gb|FL392429.1|FL392429
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGEST: gi|211466962|gb|FL423373.1|FL423373
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
EST: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCT GAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
genomic: AATCGCATTTCGAAATCCCCAAACGGAAGCATCGCCACTCTTCCGAACCTgtagtcgctt ... gcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCG
tttttttttacctatttctatttatggtgatggtggtggtggtgtgcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGGCGGGTGCGTCGCTTCGTGGAGCGGCGATCGGAGATTGCCGGCGGTCAA
tatttctatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtcgcttacccactgccaactcagcgccatactgttgaattttttttttacctatttctatttatggtgatggtggtggtggtgtgcgatcgcagGAACAATCACCACCGTTATTAAGAAGATGATGCGCTGCGCTGCAACGGGCGGCGGGTGCGTCGCTTCGTGGAGCGGCGATCGGAGATTGCCGGCGGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT