1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctatctagggatatatcatctatgcaattcttacctagcctttcagacactgtctcactaactatcttcacaatgttgatcaccaaatgaacttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTCAGTACACCCTCAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGCTTG
species | Zea mays |
transcript | GRMZM2G153393_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|149106214|gb|EE291907.2|EE291907
genomic: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|101388907|gb|EB816435.1|EB816435
genomic: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|211334695|gb|FL296071.1|FL296071
genomic: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: AGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|67014194|gb|CO442943.1|CO442943
genomic: AGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|211334696|gb|FL296072.1|FL296072
genomic: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGATATGACCGGTEST: gi|60395662|gb|DN228532.1|DN228532
genomic: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: AAGCTTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|211334693|gb|FL296069.1|FL296069
genomic: AAGC-TTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAG GCAGCAGAACAGAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTEST: gi|101390185|gb|EB817025.1|EB817025
genomic: ACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
EST: AGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATACC-G GCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
genomic: AGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGgtaatggtca ... acttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGT
gacactgtctcactaactatcttcacaatgttgatcaccaaatgaacttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTCAGTACACCCTCAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGCTTG
taactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatctagggatatatcatctatgcaattcttacctagcctttcagacactgtctcactaactatcttcacaatgttgatcaccaaatgaacttgtgtagGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTCAGTACACCCTCAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG