1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgcagtttacctttcatattgaacctgtagtgacttatttttactgcatatccctacctttcggtttctactggcttaattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGGGTGCTACCTATGTTCGTTCTTCCTGTTG
species | Zea mays |
transcript | GRMZM2G153332_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|32941845|gb|CF046664.1|CF046664
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: GTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|71299580|gb|DR785804.1|DR785804
genomic: GTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|78115933|gb|DV534321.1|DV534321
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|93017028|gb|EB642548.1|EB642548
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|94477187|gb|EB706145.1|EB706145
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|211392739|gb|FL051936.1|FL051936
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|148957123|gb|EC903107.2|EC903107
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTEST: gi|211392738|gb|FL051935.1|FL051935
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
EST: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAG GTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACT
tgcatatccctacctttcggtttctactggcttaattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGGGTGCTACCTATGTTCGTTCTTCCTGTTG
gcttaat putative branch site (score: 67)
tcctgttctc putative PPT
ttaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcagtttacctttcatattgaacctgtagtgacttatttttactgcatatccctacctttcggtttctactggcttaattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGATGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGGGTGCTACCTATGTTCGTTCTTCCTGTTG
-tgcagtt
- - - - - - -ttcatat
- - - - - - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactgg