Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcatatgtcctgatgtccatggcttagaaaaacgatcgatccagtttattatcatccgatctctgcatgcaaaaacacaaaaacaagagctttctgacgacgatgcagcaaaccgagaatgatgcgttaattggccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTCGAGCAGCTCTTCAAGGAGACCGGGAGCTTCTCCAAGAACTTCACGCCAG

Basic information

species Zea mays
transcript GRMZM2G153268_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153268_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g45010.1 (Oryza sativa), 3'ss of exon 1
gtacgtgcatatgtcctgatgtccatggcttagaaaaacgatcgatccagtttattatcatccgatctctgcatgcaaaaacacaaaaacaagagctttctgacgacgatgcagcaaaccgagaatgatgcgttaattggccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTCGAGCAGCTCTTCAAGGAGACCGGGAGCTTCTCCAAGAACTTCACGCCAG
                         |  |    || |||    |||    ||| |     |  ||  ||   ||   ||  ||||     ||     || |||   ||  || ||| |   |   ||||    |  |  |    ||  |||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||
------------------------gtaacgctcaacaacaccagattttctttttccctgtgggaaatcg--atcgtaactcacatggttaa-----ttgtgatcgcg-cgctgcagaggcacgttgattaacttgtgtgggatct-tagATGTGCAGCTACTCGTCCATGGACGGCGTCCTCTACTGCAAGACCCACTTTGAGCAGCTCTTCAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAG

upper sequence: GRMZM2G153268_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G01780.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacgtgcatatgtcctgatgtccatggcttagaaaaacgatcgatccagtttattatcatccgatctctgcatgcaaaaa-cacaaaaacaagagctttctgacgacgatgcagcaaaccgagaatgatgcgttaattggccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTCGAGCAGCTCTTCAAGGAGACCGGGAGCTTCTCCAAGAACTTCACGCCAG
                                                                     ||||  ||  |  ||          || | |   | ||  ||  |  | | |   ||  ||   |  ||  |  |   ||||||| ||| ||| |||||||||||||| ||  ||||||||||||| || || ||||| |||||||||||  | || |  |||  ||| |||||    ||||
--------------------------------------------------------------------gtgcactcattactcattttcttgttagatcttctatgatcat--attatatc---aacaatttatctatgtgttgatggcagATGAGCAACTATTCCTCCATGGACGGAGTTTTGTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCAAAAACTTTCAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32869149|gb|CF008831.1|CF008831
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|87154241|gb|DY399030.1|DY399030
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906529|gb|CF011342.1|CF011342
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21331083|gb|BQ486464.1|BQ486464
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868830|gb|CF008512.1|CF008512
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869962|gb|CF009644.1|CF009644
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869130|gb|CF008812.1|CF008812
EST:     TTTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|26455055|gb|CA826638.1|CA826638
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906145|gb|CF010958.1|CF010958
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906711|gb|CF011524.1|CF011524
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390364|gb|BQ528413.1|BQ528413
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330643|gb|BQ486024.1|BQ486024
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868902|gb|CF008584.1|CF008584
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868798|gb|CF008480.1|CF008480
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869732|gb|CF009414.1|CF009414
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906188|gb|CF011001.1|CF011001
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330230|gb|BQ485611.1|BQ485611
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|22545300|gb|BU097659.1|BU097659
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|94476869|gb|EB705827.1|EB705827
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869347|gb|CF009029.1|CF009029
EST:     TTTACTATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868820|gb|CF008502.1|CF008502
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCCACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21481463|gb|BQ578132.1|BQ578132
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390720|gb|BQ528769.1|BQ528769
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869678|gb|CF009360.1|CF009360
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|26455721|gb|CA827304.1|CA827304
EST:     GCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGG-GTGCTGTACTGCAAGACCCACTTC
genomic: GCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906776|gb|CF011589.1|CF011589
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906353|gb|CF011166.1|CF011166
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|91056696|gb|EB167114.1|EB167114
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869004|gb|CF008686.1|CF008686
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869935|gb|CF009617.1|CF009617
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390974|gb|BQ529023.1|BQ529023
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|76284258|gb|DV023826.1|DV023826
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906072|gb|CF010885.1|CF010885
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330566|gb|BQ485947.1|BQ485947
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32871088|gb|CF010770.1|CF010770
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21331044|gb|BQ486425.1|BQ486425
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|22545271|gb|BU097644.1|BU097644
EST:     GCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: GCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870933|gb|CF010615.1|CF010615
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869706|gb|CF009388.1|CF009388
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870944|gb|CF010626.1|CF010626
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870848|gb|CF010530.1|CF010530
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870419|gb|CF010101.1|CF010101
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868838|gb|CF008520.1|CF008520
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21329906|gb|BQ485287.1|BQ485287
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21480717|gb|BQ577386.1|BQ577386
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|7227421|gb|AW566062.1|AW566062
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870261|gb|CF009943.1|CF009943
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|76282033|gb|DV021601.1|DV021601
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390840|gb|BQ528889.1|BQ528889
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390269|gb|BQ528318.1|BQ528318
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|26455136|gb|CA826719.1|CA826719
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869728|gb|CF009410.1|CF009410
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870106|gb|CF009788.1|CF009788
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390973|gb|BQ529022.1|BQ529022
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|22545379|gb|BU097738.1|BU097738
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330198|gb|BQ485579.1|BQ485579
EST:     GCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: GCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32870141|gb|CF009823.1|CF009823
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21331059|gb|BQ486440.1|BQ486440
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21390394|gb|BQ528443.1|BQ528443
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|78107661|gb|DV526079.1|DV526079
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868879|gb|CF008561.1|CF008561
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868808|gb|CF008490.1|CF008490
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906097|gb|CF010910.1|CF010910
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906151|gb|CF010964.1|CF010964
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869561|gb|CF009243.1|CF009243
EST:     TCTACCTTTATACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|116828641|gb|EC859969.1|EC859969
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330488|gb|BQ485869.1|BQ485869
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|37426500|gb|CF651005.1|CF651005
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869921|gb|CF009603.1|CF009603
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|116825115|gb|EC868813.1|EC868813
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21236524|gb|BQ441983.1|BQ441983
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869817|gb|CF009499.1|CF009499
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21480986|gb|BQ577669.1|BQ577669
EST:     TCTACCATAAGACATGCTTCAAGGGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32871116|gb|CF010798.1|CF010798
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906740|gb|CF011553.1|CF011553
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330501|gb|BQ485882.1|BQ485882
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32868963|gb|CF008645.1|CF008645
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21481063|gb|BQ577746.1|BQ577746
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330850|gb|BQ486231.1|BQ486231
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869103|gb|CF008785.1|CF008785
EST:     TTTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330823|gb|BQ486204.1|BQ486204
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906542|gb|CF011355.1|CF011355
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21330444|gb|BQ485825.1|BQ485825
EST:     GCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: GCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|22545294|gb|BU097639.1|BU097639
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|87154644|gb|DY399433.1|DY399433
EST:     GCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: GCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|21481497|gb|BQ578180.1|BQ578180
EST:     GCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: GCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|116825532|gb|EC869263.1|EC869263
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32906089|gb|CF010902.1|CF010902
EST:     TCTACCATAAGACATGCTTCAAGGGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869933|gb|CF009615.1|CF009615
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|76018262|gb|DT945432.1|DT945432
EST:     TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
EST: gi|32869627|gb|CF009309.1|CF009309
EST:     -NNNNNNNAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCG                         ATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC
genomic: TCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 303

GTGCGACAAGACCGTCCACTTCATCGACCTCCTCACGGCCGACGGCGCCATCTACCATAAGACATGCTTCAAGTGCAGCCACTGCAAAGGGGTCCTCTCGgtacgtgcat ... ccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTCGAGCAGCTCTTCAAGGAGACCGGGAGCTTCTCCAAGAACTTCACGCCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctgacgacgatgcagcaaaccgagaatgatgcgttaattggccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTCGAGCAGCTCTTCAAGGAGACCGGGAGCTTCTCCAAGAACTTCACGCCAG
                                     ttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtgcatatgtcctgatgtccatggcttagaaaaacgatcgatccagtttattatcatccgatctctgcatgcaaaaacacaaaaacaagagctttctgacgacgatgcagcaaaccgagaatgatgcgttaattggccgcctgcagATGTGCAGCTACTCCTCCATGGACGGTGTGCTGTACTGCAAGACCCACTTCGAGCAGCTCTTCAAGGAGACCGGGAGCTTCTCCAAGAACTTCACGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC