1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgcgggcgggccgaattgcgcctctccccacacggatccgagagattccatcccgatttttcttggtgttcgtaggcctgattcggcgtttggcttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGTACTTGCGGATCCAG
species | Zea mays |
transcript | GRMZM2G152888_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|211452245|gb|FK947265.1|FK947265
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|211452253|gb|FK947273.1|FK947273
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|211527655|gb|FL070682.1|FL070682
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|211452252|gb|FK947272.1|FK947272
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|76014233|gb|DT941403.1|DT941403
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|211452244|gb|FK947264.1|FK947264
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|37420937|gb|CF648165.1|CF648165
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGAEST: gi|211452248|gb|FK947268.1|FK947268
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGA
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGEST: gi|78083290|gb|DV511683.1|DV511683
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
EST: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAG GGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
genomic: GGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggc ... cttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTG
catcccgatttttcttggtgttcgtaggcctgattcggcgtttggcttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGTACTTGCGGATCCAG
gcctgat putative branch site (score: 167)
atttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgggcgggccgaattgcgcctctccccacacggatccgagagattccatcccgatttttcttggtgttcgtaggcctgattcggcgtttggcttcgtgcagGGGTACGCGCCGATCTGCCTGGGCCTGGAGGATTTCTATGTGCGACGCCTGTACTTGCGGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT