Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcctgtttccaccaaatagaattcgttattaagctgatgtagtctttattttctatttggccaagtgctaatatttttgtgttgcctgctccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACAATGTGTATGTCTGTCGCTCTGGATCT

Basic information

species Zea mays
transcript GRMZM2G152775_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152775_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 3'ss of exon 1
ctcctgtttccaccaaatagaattcgttattaagctgatgtagtcttta---ttttctatttggcca----agtgctaatatttttgtgttgcc-tgctccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACAATGTGTATGTCTGTCGCTCTGGATCT
        |  | | ||| ||| ||  ||||||| || |||  ||| |    || |||||||   |     | |   | |   |||||  ||   || |    || |||||||||||| || |||||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||
--------ttgatccaatcgaaatcaatattaagttggtgtgctctgtctgcttgtctattttttccctttaatttaattgcctttgttatgtggtgttaattcttagGAATGTATGTGGCGAACCGTGCATCTGACAAAATTACTCAACTGACTGACAATGTGTACGTCTGCCGCTCTGGATCT

upper sequence: GRMZM2G152775_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g53060.2 (Oryza sativa), 3'ss of exon 1
ctcctgtttccaccaaatagaattcgttattaagctgatgtagtct-ttattttctatttggccaagtgctaatat-ttttgtgttgcctgctccaa---ctcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACAATGTGTATGTCTGTCGCTCTGGATCT
    ||||   | | ||  ||| ||| | ||| | ||| ||| | | ||  ||| | ||   |       ||||||    | ||||| ||| |   |   || |||||||||||| || |||||||| || |||||||||||||| || || |||||||||||  |||| ||||||||||||
---atgttctgaaccaactgaaatcgatgttatgttgacgtactatgttggtttttgtt--actttcctttaatataccctttgttgtctggtattaattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT

upper sequence: GRMZM2G152775_T04 (Zea mays), 3'ss of exon 1
lower sequence: AT4G31300.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------------------------------------------------------ctcctgtttccacca-aatagaattcgttattaagctgatgtagtctttattttctatttggccaagtgctaatatttt--tgtgttgcctgct-ccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACAATGTGTATGTCTGTCGCTCTGGATCT
                                                                        |   ||||| | |  || | |      |  ||| |   |||  | |||   |  | |   |  |  || |||  ||    | |||||     | |   | |||| ||||| ||||| || || ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| 
gtgagatttccccccttctctacttttctagggttttagttcctcttcgttgggtttgtatttgagttttgttttcgtttcaatcggaacaaagaataatcctaatcgattgttctatttgggtaatttagagaaagctgttaaatttgggatctgttgtaaattactcgcgcagGTATGTACGTAGCGAATCGAGCTTCTGATAAGATTACACAACTGACAGATAATGTCTACGTCTGCCGCTCTGGATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84977380|gb|DW475802.1|DW475802
EST:     GCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: GCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|60343030|gb|DN210003.1|DN210003
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211422181|gb|FK988627.1|FK988627
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211427386|gb|FK988649.1|FK988649
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTNCA-CTGACAGAC
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACT-CAACTGACAGAC
EST: gi|211427393|gb|FK988656.1|FK988656
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211422178|gb|FK988624.1|FK988624
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419575|gb|FK988608.1|FK988608
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|32860271|gb|CD999952.1|CD999952
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|148937130|gb|EC881305.2|EC881305
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|148951987|gb|EC897769.2|EC897769
EST:     CAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|89252178|gb|DY623964.1|DY623964
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|9742817|gb|BE518965.1|BE518965
EST:     TGCTACGAGGGCGGCGTCGTCCTGGTTGTCTGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: TGCTACGAGGGCGGCGTCGTCCTGGGCG-CCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211451729|gb|FL033175.1|FL033175
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211427388|gb|FK988651.1|FK988651
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424798|gb|FK988647.1|FK988647
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424785|gb|FK988634.1|FK988634
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|71303126|gb|DR787669.1|DR787669
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|76016135|gb|DT943305.1|DT943305
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|60337945|gb|DN204918.1|DN204918
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211422175|gb|FK988621.1|FK988621
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211285041|gb|FK988603.1|FK988603
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|67014760|gb|CO443509.1|CO443509
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|149102586|gb|EE287944.2|EE287944
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACCAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419585|gb|FK988618.1|FK988618
EST:     TGCTACGAAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: TGCTACG-AGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419577|gb|FK988610.1|FK988610
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|9953599|gb|BE640182.1|BE640182
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCGCTG                         GAATGTATGTAGCCAGCCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424789|gb|FK988638.1|FK988638
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424791|gb|FK988640.1|FK988640
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419582|gb|FK988615.1|FK988615
EST:     CTGCTACGAGGGCGGCGTCGTCCTNGGCTCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|101398688|gb|EB821216.1|EB821216
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|32935675|gb|CF040487.1|CF040487
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|74235912|gb|DT643826.1|DT643826
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211427387|gb|FK988650.1|FK988650
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|89247977|gb|DY619763.1|DY619763
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|76925303|gb|DV170371.1|DV170371
EST:     CTGCTACGAGGGCGGCGTCCTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCCACCGTGCTTCCGACAAGATTTACTCAACTGACAGAC
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATT-ACTCAACTGACAGAC
EST: gi|148952879|gb|EC898871.2|EC898871
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|148971697|gb|EE022425.2|EE022425
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACGAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424796|gb|FK988645.1|FK988645
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211422173|gb|FK988619.1|FK988619
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211422177|gb|FK988623.1|FK988623
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419584|gb|FK988617.1|FK988617
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424797|gb|FK988646.1|FK988646
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211422176|gb|FK988622.1|FK988622
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|87155595|gb|DY400384.1|DY400384
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|94476275|gb|EB705233.1|EB705233
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211285040|gb|FK988602.1|FK988602
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|94476274|gb|EB705232.1|EB705232
EST:     GTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: GTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|149109227|gb|EE190086.2|EE190086
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424793|gb|FK988642.1|FK988642
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419574|gb|FK988607.1|FK988607
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|161589696|gb|EY963443.1|EY963443
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGTCTTCA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTG-CTTCA
EST: gi|149085984|gb|EE175511.2|EE175511
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419572|gb|FK988605.1|FK988605
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211419578|gb|FK988611.1|FK988611
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCNACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|37396589|gb|CF635586.1|CF635586
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|91050670|gb|EB161088.1|EB161088
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|211424794|gb|FK988643.1|FK988643
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|50323649|gb|CO518775.1|CO518775
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|76287815|gb|DV027383.1|DV027383
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttctatttggccaagtgctaatatttttgtgttgcctgctccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACAATGTGTATGTCTGTCGCTCTGGATCT
                     tgctaat  putative branch site (score: 2)
                                        cctgctcc  putative PPT
                        taatatttttgtgtt  TA-rich tract