Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211075792|gb|FL122631.1|FL122631EST: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTGAAGACCCCAG GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST:
gi|211075789|gb|FL122628.1|FL122628EST: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGG
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGG
EST:
gi|50337740|gb|CO532866.1|CO532866EST: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST:
gi|78104835|gb|DV523253.1|DV523253EST: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctttatctgtgttgtgttcttggttgtattaattggttcgctggattcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTCACCGGGAAGAAAATCCAGGGGGTGAGTGATTGATTGTTAGC
tattaat putative branch site (score: 2)
ttcttgc putative PPT
ttgtattaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcgccccgtctgttcattcctgctcgatatgggaggggtctttggtttctttatctgtgttgtgttcttggttgtattaattggttcgctggattcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTCACCGGGAAGAAAATCCAGGGGGTGAGTGATTGATTGTTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA