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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatgcactcggctgtaccaccacccaagcaaaagcgccgctgcttgctagctagtgctcggtgatgacagctgaacagcgactgctttcccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGCGACAACTTCTACGAGAACGGCCTGACGGGCACGGATGACGAGGCGTTCG

Basic information

species Zea mays
transcript GRMZM2G152477_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152477_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g13540.1 (Oryza sativa), 3'ss of exon 1
-----gcatgcactcggctgtaccaccacccaagcaaaagcgccgctgcttgctagctagtgctcggtgatgacagctgaacagcgactgctttcccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGCGACAACTTCTACGAGAACGGCCTGACGGGCACGGATGACGAGGCGTTCG
     | ||  | |    || |          |  |     |    |  ||  ||  |||         |  | |  | |  |  |||   ||  |    || ||||||| | |||||||||| |||| |  || |||||||||||||||||||| ||||| ||||||||| | || || || |||   |||||| ||||||| |
tatttgtat-tattaaagtgaatactttttttaaaactgaaggtattattttttaaatagcaaagacaaacaata-ttaagtatggacaatttatc---atgcagATGGGGAAGGTTGGGGAGAAGCTAAATATAGACTTCGTCATATCCACCGGTGACAATTTCTACGAGGATGGACTCACTGGCGTCGATGACCAGGCGTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101397948|gb|EB820851.1|EB820851
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|149107111|gb|EE189001.2|EE189001
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|50335510|gb|CO530636.1|CO530636
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|211072232|gb|FL200232.1|FL200232
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|71767234|gb|DR965171.1|DR965171
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|148973087|gb|EE024151.2|EE024151
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|149072306|gb|EE160571.2|EE160571
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|76289549|gb|DV029117.1|DV029117
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|89247687|gb|DY619473.1|DY619473
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|71309437|gb|DR791006.1|DR791006
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGGCAGGGTTGGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCG
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGG-CAGGGTTGGGG-AGCAGCTCAGCATCGACTTCGTCATATCCACCG
EST: gi|78087669|gb|DV516062.1|DV516062
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|211072234|gb|FL200234.1|FL200234
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|74239383|gb|DT647297.1|DT647297
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|71432358|gb|DR813408.1|DR813408
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|76012119|gb|DT939289.1|DT939289
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|211072233|gb|FL200233.1|FL200233
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|20299974|gb|BQ162917.1|BQ162917
EST:     GACTGGGGCCCAAAAGGGCCGCGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GACTGGGG-CCGAAAGGG-CACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|148943407|gb|EC888466.2|EC888466
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|148966046|gb|EE016980.2|EE016980
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|71767917|gb|DR965854.1|DR965854
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|78118175|gb|DV536562.1|DV536562
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|76012840|gb|DT940010.1|DT940010
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|19821796|gb|BQ047820.1|BQ047820
EST:     CGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCA-CATCGACTTCG-CATATCCACCGGC
genomic: CGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|76280616|gb|DV020184.1|DV020184
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|78114011|gb|DV532400.1|DV532400
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|149008292|gb|EE040441.2|EE040441
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|78105515|gb|DV523933.1|DV523933
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|74245680|gb|DT653594.1|DT653594
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|37417545|gb|CF646426.1|CF646426
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAG
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAG
EST: gi|71433301|gb|DR814351.1|DR814351
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|149014265|gb|EE043835.2|EE043835
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|149039483|gb|EE046624.2|EE046624
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|211074959|gb|FL200236.1|FL200236
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|71430081|gb|DR811131.1|DR811131
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|89758274|gb|DY687518.1|DY687518
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
EST: gi|148986094|gb|EE029903.2|EE029903
EST:     GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAG                         ATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC
genomic: GCGACTGGGGCCGAAAGGGCACGTTCAACCAGTCCAGGGTCGCCCATCAGgtacgtaacc ... ccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctagctagtgctcggtgatgacagctgaacagcgactgctttcccatgtgtagATGGGCAGGGTTGGGGAGCAGCTCAGCATCGACTTCGTCATATCCACCGGCGACAACTTCTACGAGAACGGCCTGACGGGCACGGATGACGAGGCGTTCG
                                     ctgctttccc  CT-rich tract