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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgtccatccctcccctctcctccccgcgcgtctcgtttccacatctctgttctctggtggcgtaatcctcacatatcacgaaccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGCGCGAGCCCACTAGCCTGGCGCCGTATGGCATCTCCATCTCGCCGCTCTC

Basic information

species Zea mays
transcript GRMZM2G152056_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308767|gb|FL253751.1|FL253751
EST:     GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211308771|gb|FL253755.1|FL253755
EST:     GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211308766|gb|FL253750.1|FL253750
EST:     GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|37422189|gb|CF648800.1|CF648800
EST:     GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211308770|gb|FL253754.1|FL253754
EST:     GCTCCAGCGCCGGCGCCGTGCCGCCTTCCTACACATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211306744|gb|FL253741.1|FL253741
EST:     GCTCCAGCGCCGGCGCCGTGCCGCCTTCCTACACATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211308775|gb|FL253759.1|FL253759
EST:     GCTCCAGCGCCGGCGCCGTGCCGCCTTCCTACACATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211306745|gb|FL253742.1|FL253742
EST:     GCTCCAGCGCCGGCGCCGTGCCGCCTTCCTACACATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
EST: gi|211306750|gb|FL253747.1|FL253747
EST:     GCTCCAGCGCCGGCGCCGTGCCGCCTTCCTACACATCGCCGCCTCCAAGC                         GTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC
genomic: GCTCCAGCGCCGGCGCCGTGCCACCTTCATACCCATCGCCGCCTCCAAGCgtacgtgtcc ... ccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacatctctgttctctggtggcgtaatcctcacatatcacgaaccgtctacagGTCACGAAGACGACAAGGAGACCGCTAAAGGTTCCGGCTCGGAACCCCGGCGCGAGCCCACTAGCCTGGCGCCGTATGGCATCTCCATCTCGCCGCTCTC
                            tcctcac  putative branch site (score: 2)