Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcgctcttctccttgcccgtgtccgcgggtacgtatggccgattcggcgatcactgatccactgggccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC

Basic information

species Zea mays
transcript GRMZM2G151977_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151977_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g03470.4 (Oryza sativa), 3'ss of exon 1
-------------------------------------------------------gtatcgctcttctccttgcccgtgtccgcgggtacgtatggccgattcggcga-tcactgatccactgggc----cgccggta--------gGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC-----------------------------------
                                                       |   | | || | |     ||  || |   |   ||| || ||  | |      || | ||| |  ||  |    ||||  ||        |||||| |||||||||||| | ||||||||||| |||||||| |||||||||||||| ||  ||||||||| |||| |||| |||||||||||| |  | |                                   
gtcctcctcggctgcggcggcgtcggccgccaccttctccgccacatcgtctcctgccgcccgctccacgccaaccaggtacctcgtctcgtctgacccgtccccttcctctccgattcggtgctctcatcgcccatacttgtatagggcgtcgccatccgggtgctcggcgtcgccgacagCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCT

upper sequence: GRMZM2G151977_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g03190.1 (Oryza sativa), 3'ss of exon 1
--gtatcgctcttctccttgcccgtgtccgcgggtacgtatggccgattcggcgatcactgatccactgggccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC
     |  ||| |||    |||| |  || |     |   |  |||||| |  | || |     | | |   |     |||||||| |||||||||||| | ||||||||||| |||||||| |||||||||||||| ||  ||||||||| |||| |||| |||||||||||| |  | |
gtacgtacctcgtctgaccgcccct-ccctctccccctcctctccgattggatgctctca---tcgccgatacttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATC

upper sequence: GRMZM2G151977_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g03470.1 (Oryza sativa), 3'ss of exon 1
gtatcgctcttctccttgcccgtgtccgcgggtacgtatggccgattcggcgatcactgatccactgggccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC
||| | |   ||  ||  |||||  ||     | | | |  ||||||||| | || |  |||  |    |      |||||||| |||||||||||| | ||||||||||| |||||||| |||||||||||||| ||  ||||||||| |||| |||| |||||||||||| |  | |
gtacctcgtctcgtctgacccgtcccc-----ttcctct--ccgattcggtgctctc--atcgcccatacttgta-tagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211499920|gb|FL302706.1|FL302706
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499915|gb|FL302701.1|FL302701
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|91876333|gb|EB406290.1|EB406290
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|148966783|gb|EE017871.2|EE017871
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211066379|gb|FL302724.1|FL302724
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499921|gb|FL302707.1|FL302707
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|148952245|gb|EC898050.2|EC898050
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|78080728|gb|DV509140.1|DV509140
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|148966141|gb|EE017084.2|EE017084
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499917|gb|FL302703.1|FL302703
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211066374|gb|FL302719.1|FL302719
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|101393900|gb|EB818883.1|EB818883
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCCGTCGCCGATAGCTCCTCCCTGCTCGT
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGC-GTCGCCGATAGCTCCTCCCTGCTCGT
EST: gi|148944776|gb|EC889918.2|EC889918
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499922|gb|FL302708.1|FL302708
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499916|gb|FL302702.1|FL302702
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|91050260|gb|EB160678.1|EB160678
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|31361610|gb|CD445967.1|CD445967
EST:     GTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|71314894|gb|DR794068.1|DR794068
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|71448119|gb|DR829169.1|DR829169
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|148938292|gb|EC882596.2|EC882596
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499914|gb|FL302700.1|FL302700
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499919|gb|FL302705.1|FL302705
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|71770930|gb|DR968867.1|DR968867
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|14191192|gb|BG833422.1|BG833422
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|148936622|gb|EC880746.2|EC880746
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|148950925|gb|EC896556.2|EC896556
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|93016572|gb|EB642092.1|EB642092
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|94477192|gb|EB706150.1|EB706150
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC
EST: gi|211499923|gb|FL302709.1|FL302709
EST:     GCTACCTCCTCCGCCACATCGTCTCCTGTCGTCCCCTCCACGCCAACCAG                         GGCGTGGCCATCCGGGTGGTGGGCGTCGC-GATAGCTCCTCCCTGCTCGTC
genomic: GCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 29

AGTGAAGTCGGTGCTGCCCGTAGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 19

AGTGAAGTCGGTGCTGCCCGTAGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 13

AGTGAAGTCGGTGCTGCCCGTAGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 23

AGTGAAGTCGGTGCTGCCCGTAGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGgtatcgctct ... ccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgcgggtacgtatggccgattcggcgatcactgatccactgggccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC
                              cactgat  putative branch site (score: 23)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcgctcttctccttgcccgtgtccgcgggtacgtatggccgattcggcgatcactgatccactgggccgccggtagGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC