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...attctactatcttgtgccccagtcctcagcattttaaacatggataccatgtttcggctatgtgctaccaccttttcttatggattttactctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCTCAACAACCATTGGAGGGAAGAATGGAGAGCCTAAAAAG
species | Zea mays |
transcript | GRMZM2G151916_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211449760|gb|FL269008.1|FL269008
genomic: ACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCGTCGCCAAG CATGCTGGTTCTATGATTGAAGGGAGTGATCCAGTCACGGGTCATATAATCEST: gi|211451889|gb|FL269015.1|FL269015
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211451885|gb|FL269011.1|FL269011
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCGTCGCCAAG CATGCTGGTTCTATGATTGAAGGGAGTGATCCAGTCACGGGTCATATAATCEST: gi|211451891|gb|FL269017.1|FL269017
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211449756|gb|FL269004.1|FL269004
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGG-CCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|31363742|gb|CD448099.1|CD448099
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCAACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211451886|gb|FL269012.1|FL269012
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCGTCGCCAAG CATGCTGGTTCTATGATTGAAGGGAGTGATCCAGTCACGGGTCATATAATCEST: gi|29577163|gb|CB617275.1|CB617275
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|86470098|gb|DY236468.1|DY236468
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: ACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211449759|gb|FL269007.1|FL269007
genomic: ACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACTCGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|50339420|gb|CO534546.1|CO534546
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: ACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|6865198|gb|AW360548.1|AW360548
genomic: ACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCGTCGCCAAG CATGCTGGTTCTATGATTGAAGGGAGTGATCCAGTCACGGGTCATATAATCEST: gi|19822262|gb|BQ048286.1|BQ048286
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: ACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCAACGCCAAGCAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATEST: gi|211449757|gb|FL269005.1|FL269005
genomic: ACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCC-A--AGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAAT
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGG-CCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211451888|gb|FL269014.1|FL269014
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAG CATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCEST: gi|211449762|gb|FL269010.1|FL269010
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
EST: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCCGTCGCCAAG CATGCTGGTTCTATGATTGAAGGGAGTGATCCAGTCACGGGTCATATAATC
genomic: TGGACCAGCCGCTCCCCGCTGCGGCCGCACACGGCCCCGCGGACGCCAAGgtgagcgggt ... tctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATC
accatgtttcggctatgtgctaccaccttttcttatggattttactctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCTCAACAACCATTGGAGGGAAGAATGGAGAGCCTAAAAAG
ttttactct CT-rich tract
ttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctactatcttgtgccccagtcctcagcattttaaacatggataccatgtttcggctatgtgctaccaccttttcttatggattttactctgtaacagCATGCTGGTTCTATGATTGAAGGGAATGATCCAGTCACGGGTCATATAATCTCAACAACCATTGGAGGGAAGAATGGAGAGCCTAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - cttgtgc
- - - - - - - - - - - - - - - - - - -acatgga
- - - - - - - - - - - - - - - - - - - - - - - - atgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtg