Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actggatgcactggacacaagcacacaaaaactgaggtggtaccaatgaacaaatggccatctgaagccctcactatcccctctgtttctctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC

Basic information

species Zea mays
transcript GRMZM2G151580_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151580_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g10410.1 (Oryza sativa), 3'ss of exon 1
actggatgcactggacacaagcacacaaaaactgaggtggtaccaatgaacaaatggccatctga-agccctcactatcccctctgtt---tctctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC
  |  | | | |     ||       ||| | |  | |  |  |||  || |||    ||||||| |    | || || || | || |   |   | || |||||| ||||||   ||||| ||||||||||||||| | |||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||
--ttaaaggatttcgttca--tttctaaagaatatgtttcttgcaagaaaaaaaaaatcatctgacatgtattaccattccttgtgatggcttatttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGGAACTGACTGTTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211093052|gb|FL420423.1|FL420423
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211100223|gb|FL405650.1|FL405650
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211451594|gb|FL373081.1|FL373081
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211111976|gb|FL386053.1|FL386053
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|76934754|gb|DV174014.1|DV174014
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211300765|gb|FL380983.1|FL380983
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCMG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAAGKTTTTGAG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGG-TTTTGAG
EST: gi|211482108|gb|FL397167.1|FL397167
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|28910110|gb|CB331266.1|CB331266
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211209474|gb|FL385668.1|FL385668
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|74245692|gb|DT653606.1|DT653606
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|149079676|gb|EE168672.2|EE168672
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|148965294|gb|EE016099.2|EE016099
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211079651|gb|FL402142.1|FL402142
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGA
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211219237|gb|FL377229.1|FL377229
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTG
EST: gi|101394443|gb|EB819156.1|EB819156
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|31350966|gb|CD435323.1|CD435323
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211223287|gb|FL370924.1|FL370924
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211469271|gb|FL411607.1|FL411607
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211526759|gb|FL372689.1|FL372689
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|149059488|gb|EE156973.2|EE156973
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|78110457|gb|DV528867.1|DV528867
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211060466|gb|FL406471.1|FL406471
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211134623|gb|FL369505.1|FL369505
EST:     AGGCGCTCGCCATCGCCGCCAACCTCAGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211469566|gb|FL427738.1|FL427738
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|22545500|gb|BU097859.1|BU097859
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211313156|gb|FL384840.1|FL384840
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211511087|gb|FL380251.1|FL380251
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|86467153|gb|DY233523.1|DY233523
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTATCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|101391367|gb|EB817618.1|EB817618
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211093054|gb|FL420425.1|FL420425
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTTGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211032703|gb|FL419052.1|FL419052
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211288488|gb|FL412721.1|FL412721
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACT
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACT
EST: gi|211105662|gb|FL427074.1|FL427074
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|211023129|gb|FL428619.1|FL428619
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
EST: gi|22473167|gb|BU037647.1|BU037647
EST:     AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAG                         GAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG
genomic: AGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 161

CATGGCGGCGGCGCAGCCGAAGCCGGCCAAGAGGCTGGGCGGCATGGCGGAGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 119

CATGGCGGCGGCGCAGCCGAAGCCGGCCAAGAGGCTGGGCGGCATGGCGGAGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 133

CATGGCGGCGGCGCAGCCGAAGCCGGCCAAGAGGCTGGGCGGCATGGCGGAGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 155

CATGGCGGCGGCGCAGCCGAAGCCGGCCAAGAGGCTGGGCGGCATGGCGGAGGCGCTCGCCATCGCCGCCGACCTCGGATTCCCCGCCTCTACCACGCAGgtccgtcaca ... ctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaacaaatggccatctgaagccctcactatcccctctgtttctctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC
                      ccctcac  putative branch site (score: 155)
                      ccctcactatcccctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actggatgcactggacacaagcacacaaaaactgaggtggtaccaatgaacaaatggccatctgaagccctcactatcccctctgtttctctcattgcagGAAGATCAGACTAGCTCCGACAAAAGCGATGATTTGGTGAAGGTTTTGAGGGAACTGACTGTCGTGCAGAGGAACATTGCCAACTTGCAAGTGGAGCTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- tggatgc
- - - - - ctggaca
- - - - - - - - -caagcac
- - - - - - - - - - - - acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatctg