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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgacgtccatcagaccaacaccttccaatcattccatcggtgctccccgtctcgtccccatctctcactaaatctctgcctctcctccctcattcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG

Basic information

species Zea mays
transcript GRMZM2G151252_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151252_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g52490.1 (Oryza sativa), 3'ss of exon 1
gtaagtgac--gtccatcagaccaacaccttccaatcatt-ccatcggtgctccccgtctcgtccccatctctcactaaatctctgcctctcctccctcattcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
|| || | |  ||||||      | | | | |   || || ||  |   ||||   |  |  || |  |||||| ||  ||   |          ||| |  |||||||||||| ||||| ||||||||||||||  ||||||||||||||
gtgagcgccctgtccattctcaaagctcttcctcctccttgccgccatggctctgtgattgatctctctctctcgctggatgaat----------ccttac-cttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211447432|gb|FL376098.1|FL376098
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211319657|gb|FL415866.1|FL415866
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211450463|gb|FL416401.1|FL416401
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTTCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211290632|gb|FL412736.1|FL412736
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211441966|gb|FL416337.1|FL416337
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|166640634|gb|EG309291.1|EG309291
EST:     CAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: CAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|8516455|gb|BE123181.1|BE123181
EST:     TTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211509382|gb|FL412052.1|FL412052
EST:     TCCGCASTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211115282|gb|FL397762.1|FL397762
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|78082770|gb|DV511163.1|DV511163
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211305549|gb|FL417495.1|FL417495
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGC-AACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|32863164|gb|CF002846.1|CF002846
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCG
EST: gi|211419181|gb|FL428602.1|FL428602
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211239053|gb|FL421811.1|FL421811
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGC-AACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211468699|gb|FL380604.1|FL380604
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|93017131|gb|EB642651.1|EB642651
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|33095153|gb|CF055147.1|CF055147
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211269039|gb|FL404034.1|FL404034
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|74237715|gb|DT645629.1|DT645629
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|93013352|gb|EB638872.1|EB638872
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211112036|gb|FL390925.1|FL390925
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|166591684|gb|EG169185.1|EG169185
EST:     CAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: CAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211496370|gb|FL389443.1|FL389443
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|14529566|gb|BI096699.1|BI096699
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|211374578|gb|FL413729.1|FL413729
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGNCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGNCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
EST: gi|33095603|gb|CF055597.1|CF055597
EST:     TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTT                         GTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg ... attcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtctcgtccccatctctcactaaatctctgcctctcctccctcattcttgcagGTGCTTGAGGTTATCCACCCCGGCCGCGCCAACGTCTCCAAG
                   cactaaa  putative branch site (score: 2)
                          tctctgcctctcctcc  CT-rich tract
                    actaaat  TA-rich tract