1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atccacctctctgtcgtttattcgtcgagctgcggcctgcgggaggaaggaatgatcggatctcgggccgccgtgtcgtgacccgtgcgtgtgtgtgcagAGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCCTTCGACCACCCCGTGCTCAGAGGCCAGAAGCCCGAGGTGAG
species | Zea mays |
transcript | GRMZM2G150962_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATGGCTCGCATGGCCAGGATGGACAGGGACTCCAACATGACAATCCAG AGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCCEST: gi|50331747|gb|CO526873.1|CO526873
genomic: TCATGGCTCGCATGGCCAGGATGGACAGGGACTCCAACATGACAATCCAGgttatatttc ... gtgtgtgcagAGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCC
EST: TCATGGCTCGCATGGCCAGGATGGACAGGGACTCCAACATGACAATCCAG AGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCCEST: gi|50330983|gb|CO526109.1|CO526109
genomic: TCATGGCTCGCATGGCCAGGATGGACAGGGACTCCAACATGACAATCCAGgttatatttc ... gtgtgtgcagAGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCC
EST: TCATGGCTCGCATGGCCAGGATGGACAGGGACTCCAACATGACAATCCAG AGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCC
genomic: TCATGGCTCGCATGGCCAGGATGGACAGGGACTCCAACATGACAATCCAGgttatatttc ... gtgtgtgcagAGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccacctctctgtcgtttattcgtcgagctgcggcctgcgggaggaaggaatgatcggatctcgggccgccgtgtcgtgacccgtgcgtgtgtgtgcagAGCCCCGACGGAGACGTCATCCGCTGCGTGCCGTCGCACCTCCAGCCGGCCTTCGACCACCCCGTGCTCAGAGGCCAGAAGCCCGAGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- ccacctc
- - - - - - - - - - - - - - gctgcgg
- - - - - - - - - - - - - - - - - -cctgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgccg