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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA

Basic information

species Zea mays
transcript GRMZM2G150867_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------------------------------------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                                                                                          ||  | |     | |  | ||  | ||  || || | |    ||| |    || |     |||  | | || |  ||  |  |  |   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||  ||||
gtgaggatcttgtcctttatttatttattttttttggggggggggggggtggaattgtgtttttgcccggtttgattcttttctttctattggtggtctccatcgtctaatctgatgtgttgttgtttgttgttttgg---gggtggggggattggggattttcttggtttcttgttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G07540.2 (Glycine max), 3'ss of exon 1
-------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcct------gcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
              |     |||   |   || ||    |  |||||   || || | || | |       ||||||     |||  |    |  ||  |   |        ||||||||||| |||||||||||||| ||| | || ||||| ||||| ||||| | |||  | || | ||| || || || |
gttttccttttcccttctatttccattaaagttataattttttttttctaattgggtgtctaagtttgactcttgattctgattttgatgttagtttttttttttaattaatagGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G01940.3 (Glycine max), 3'ss of exon 1
-------------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgt-tgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                          |  | ||| |   |   | |    ||| | ||||  |||   | | |           |||   ||||||       ||||  | | | |  |||||||||||| || ||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| |  || || || || |
gtctgtgatcttttccgaattttttttttgtatttt--cgatttcagaaagtgttcttttgcataaattgttgtctttttccatttggggtgcgttggattgacatggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G01940.2 (Glycine max), 3'ss of exon 1
---------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgt-tgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                      |  | ||| |   |   | |    ||| | ||||  |||   | | |           |||   ||||||       ||||  | | | |  |||||||||||| || ||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| |  || || || || |
gtgatcttttccgaattttttttttgtatttt--cgatttcagaaagtgttcttttgcataaattgttgtctttttccatttggggtgcgttggattgacatggatcaggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37650.1 (Glycine max), 3'ss of exon 1
---------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattcc--ttgatctgcgtt---tctac-tgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                     ||     |  |   |   | ||   ||| | |||| ||||   ||    |     ||||  |||   || |||   |  || || ||   |    |  |||||||||||| || ||||||||||| | | | |||||||| ||||| ||||||||||| ||||| |  || || || || |
gtctgtgatcttttcggaattgtttttgtattttcgatttcataaagtgttcttttgtataaatttgttgtcttttttccatttggggtgtgttggattgacatggatcaggtcatcatcagGATGATGAGTGATTACAAGGTGGAGACGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G03940.2 (Glycine max), 3'ss of exon 1
---------------------------------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattcc---ttgatctgcgtttctactgcatgttgatgcctg-----cagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                                              |    ||||  ||       ||     ||||           |||   |  ||||||    ||    ||   || |  |   ||||  | |         ||||||||||| |||||||||||||| ||| | || ||||| ||||| ||||| | |||  | || | ||| || || || |
gttaatccctaatttcttctgttttcctttttttttttacctttcatttccattcaagttataatctttttctatttgggtgtctaagtttgactctggattctgtttttgattgttgttttgttttttgtttttcctcaattaatagGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCACTTCCATGGACCCAATGAGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G07540.1 (Glycine max), 3'ss of exon 1
---------------------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcct------gcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                                  |     |||   |   || ||    |  |||||   || || | || | |       ||||||     |||  |    |  ||  |   |        ||||||||||| |||||||||||||| ||| | || ||||| ||||| ||||| | |||  | || | ||| || || || |
gttaatccaccacttcttctgttttccttttcccttctatttccattaaagttataattttttttttctaattgggtgtctaagtttgactcttgattctgattttgatgttagtttttttttttaattaatagGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctg----cagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                          | ||  |  |  ||   |    |   |||||||| | ||   |||   ||  ||||  |   ||    ||| |        ||||||   |     ||||||||||| |||||||||||||| ||| | || ||||| ||||| ||||||||||| |||||  |||| || || || |
gtaatttttttaatcttattatcttatcagtttattcttgattttgagctccgattttttttctaatgtttgtttggcgatt--tgattcgatttttttgtgatgatttgatgtgagagtttagGATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0025g00070.t01 (Vitis vinifera), 3'ss of exon 1
gtgaggattctggt-ggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
|| ||  || | || ||  |  ||  |||  ||||| |  |||||||  ||  || ||  |||            | ||  | |||     | |||||||||||| || || |||||||| |||||||| ||||| ||||| ||||||| ||| || || | ||| ||    || |
gtaagtttttttgttgggatttttttgtgtgttttttttaaggattt-aatttgggttttttg----------tcattgtgttttg----ttccagGATGATGAGTGATTATAAGGTGGAGATGGTGAATGATGGCATGCAAGAGTTCTATGTCGATTTCCATGGACCCGGTGACA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S37_166V6.1 (Physcomitrella patens), 3'ss of exon 1
----------gtgaggattctggtggcgtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
          ||||  | | |  | |   || | ||||      | |   | ||    | |  | |    |      || ||| |     |||   ||   | ||||||||||| ||||||||||| || |||||||| ||||| |||   || |||| ||| || |||| ||| ||    || |
ggattgtgttgtgattacttttcttgttcgaattggtg---cggtttggggaatcggcaagttgttgttgtatctgacgattcaagaatgtgtgattgg--gtagGATGATGAGTGACTACAAGGTCGAGATGGTGAATGATGGAATGAGCGAATTCTATGTGGAGTTTCATGGACCGCGTGAGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ23672 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------gtgaggattctggtggc----gtgattcggtgattttttctataggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                                   |  |   ||  |||||       |  |  |  || ||    |      ||  |||  |||| ||| |     ||| | || |   ||  |   | |||||||||||| |||||||||||||| ||||| |||||||||||| | |||||   ||| || || | ||| |||   || |
gtgagtctcgcctcctctcgaatttcaattccttcttcgctctccagtggctatgaaaaacctctctttcttcgctttcttcctctctgctaattcattgcttcttctttttgcttcccattcctctttccagGATGATGAGTGACTACAAGGTGGAGATGGTAAACGATGGGATGAACGAGTTTAATGTGGAGTTCCATGGACCTCGGGATA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ34378 (Selaginella moellendorffii), 3'ss of exon 1
---------------------gtgaggattctggtggcgtgattcggtga--ttttttctataggatttcga------tgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                      |    ||||      ||   | | |||    | | | | |  | ||||        |||  |||| ||| |     ||| | || |   ||  |   | |||||||||||| |||||||||||||| ||||| |||||||||||| | |||||   ||| || || | ||| |||   || |
gtgagtctcgcctcctctcgaatttcaattccttcttcgctctccagtggacctctctttcttcgctttcttcctctctgctaattcattgcttcttctttttgcttcccattcctctttccagGATGATGAGTGACTACAAGGTGGAGATGGTAAACGATGGGATGAACGAGTTTAATGTGGAGTTCCATGGACCTCGGGATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211541025|gb|FL000900.1|FL000900
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541026|gb|FL000901.1|FL000901
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|15499388|gb|BI595901.1|BI595901
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541022|gb|FL000897.1|FL000897
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|87157692|gb|DY402481.1|DY402481
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|33103947|gb|CF063907.1|CF063907
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|23199807|gb|BU582372.1|BU582372
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541028|gb|FL000903.1|FL000903
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541020|gb|FL000895.1|FL000895
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|5439433|gb|AI820354.1|AI820354
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541021|gb|FL000896.1|FL000896
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATCCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541018|gb|FL000893.1|FL000893
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|84980137|gb|DW530486.1|DW530486
EST:     CTTCTCC-AGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|6223825|gb|AW154956.1|AW154956
EST:     -CCAAGATGTCTTTTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|37394410|gb|CF634479.1|CF634479
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|32911041|gb|CF015853.1|CF015853
EST:     AGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: AGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541027|gb|FL000902.1|FL000902
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
EST: gi|211541019|gb|FL000894.1|FL000894
EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 48

TCTCCAGCGCATCGTAAAGGGAGGAGCGGAGCGGCGAATTCTTGTGGTTTCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 56

TCTCCAGCGCATCGTAAAGGGAGGAGCGGAGCGGCGAATTCTTGTGGTTTCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 39

TCTCCAGCGCATCGTAAAGGGAGGAGCGGAGCGGCGAATTCTTGTGGTTTCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 66

TCTCCAGCGCATCGTAAAGGGAGGAGCGGAGCGGCGAATTCTTGTGGTTTCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattc ... atgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttcgatgcggattccttgatctgcgtttctactgcatgttgatgcctgcagGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA
                                        tgttgat  putative branch site (score: 66)