Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC

Basic information

species Zea mays
transcript GRMZM2G150616_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G02380.1 (Glycine max), 3'ss of exon 1
gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgt--tggttcgcttttt--ccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
  |    | |   ||     |  || ||   ||||    || ||   |  | |       | |||     | || |  |||  || ||       || ||   |||||    | |||||| |||| |||||||||||| | |||||| ||||| ||| ||||||||||| |  ||| ||| || 
--gttctttctctctctctctctctctctctctctatatat-atatatata-tatatatatatatatatatttgatattttattttttaaaaaaatgtttttttttttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCTACTCACCCACTGGAGTT

upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G40800.1 (Glycine max), 3'ss of exon 1
gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgctt----attgttgttggttcgctttttccg---cagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
    ||| |||   |     ||||||  || |  | | | || |   |   ||  | |  || ||| || | ||||  ||||| |    ||     ||   ||| |  |       ||||||| |||| |||||| || |||| |||||||||||||||| |||| || ||||| |||| ||| || 
----gtaaccgatttt----ttccttcgaatcattcgtgttcttt--ttttgtgtgttttttcattttcatttgttaatttgcatgaatatctcacttatatcgataatcgtaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG

upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G05130.1 (Glycine max), 3'ss of exon 1
gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
                         |||   |||||   ||  |   |  |  |  ||| | | |  | || |  |  ||     |||    ||  ||   | ||   | |||||| || | |||||||||||| | |||||| ||||||||| ||||||||||| |  ||| ||| || 
------------------------gttctctctctgtatattttatatata--ttactgatatttgatatttttatttttaaaaaatttactttttttttttattattgtagATCTCCTCTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACTACCTACTCACCCACTGGAGTT

upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G49070.1 (Glycine max), 3'ss of exon 1
----------------gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC-
                || |  || |    | | ||||  |||   | | | |   |  |   | | |||     ||| || || ||   |   |    | || | | || ||| | ||  |  | ||||||||||| |||||||||||| | |||||| ||||||||| |||| |||||| |  | | ||| ||  
tactctctctaattgtgttgaaattctaaattatgatttttttgggggtgtagaatttttccctacggttaaa-agttgatgctttttgatgaatcctttaatgggtttttgtttgtttggt--gtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTTG

upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 1
-------------------gtgggtatccgtcctaaggat--tcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
                   || |  || |     ||   |  |  |||   |   | |   |  |   | | |||       ||  |   || || ||  |     || | | || ||| | ||  |  | ||||||||||| |||||||||||| | |||||| ||||||||| |||| |||||| |  ||| ||| || 
gtactctctctctaattatgttgaaattctattaaattgtggtttttttggggggtagaatttttccttactgttaa--aaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggt--gtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT

upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G16260.1 (Glycine max), 3'ss of exon 1
gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
    ||| |||   |     ||||||| || |  | | | |  |   | || ||   ||  ||| | |   |   |   |  |||||  | | |  | |||    |   ||||||| |||| |||||| || |||| |||||||||||||||| |||| || ||||| ||||  || || 
----gtaaccgattt-----ttcctttgaatcatttgtgttttttttttcattttcatgtattaatttgcacgaatatatcacttat-atcgataat-cgcaaact---cagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACCGGAGTG

upper sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 1
--------------------gtgggtatccgtcctaaggattcctttcaagctctggggatcatggg---tgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgcttttt--ccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
                     ||| | |   |  |  |  ||   |        |     |  |||    || || | | || ||| ||   ||   ||  |||| || ||  |||| |||   |||||     |||||||  |||||||||||||||||| ||||||||| || ||  |||| | || | |  | |  || || 
gtctttcttcatttctctatctggatgtttctgttgtgtgttgagtgtggtgatttcctgttgtggaatctggagattggtgatttttttatttggatttttttgtttgtt--tgtttgttttttttttggtttcagATCTTTTGTACAAGGACTACCAGAGTGACCACAAATTGACGATCACGAGCTGCTCTCCTACCGGAGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211412244|gb|FL229030.1|FL229030
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|78121836|gb|DV540220.1|DV540220
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412254|gb|FL229040.1|FL229040
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|148936370|gb|EC880462.2|EC880462
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211414795|gb|FL229043.1|FL229043
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412252|gb|FL229038.1|FL229038
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|149110762|gb|EE190597.2|EE190597
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|148973802|gb|EE024938.2|EE024938
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|149088362|gb|EE177462.2|EE177462
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|91050628|gb|EB161046.1|EB161046
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|116815705|gb|EC858392.1|EC858392
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGCG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412253|gb|FL229039.1|FL229039
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|31348886|gb|CD433243.1|CD433243
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412247|gb|FL229033.1|FL229033
EST:     GGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412248|gb|FL229034.1|FL229034
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412256|gb|FL229042.1|FL229042
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412243|gb|FL229029.1|FL229029
EST:     GGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412250|gb|FL229036.1|FL229036
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|32855345|gb|CD995026.1|CD995026
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|93013107|gb|EB638627.1|EB638627
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|94473288|gb|EB702246.1|EB702246
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412249|gb|FL229035.1|FL229035
EST:     GGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|32934430|gb|CF039242.1|CF039242
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412245|gb|FL229031.1|FL229031
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412255|gb|FL229041.1|FL229041
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211412242|gb|FL229028.1|FL229028
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
EST: gi|211061032|gb|FL204119.1|FL204119
EST:     GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGG                         ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT
genomic: GAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 1395

GCAGCATCCCCACGCCACCACACCTCGTCGCGTCGCGTCGTCACCGGCGTGAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 683

GCAGCATCCCCACGCCACCACACCTCGTCGCGTCGCGTCGTCACCGGCGTGAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 381

GCAGCATCCCCACGCCACCACACCTCGTCGCGTCGCGTCGTCACCGGCGTGAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 1104

GCAGCATCCCCACGCCACCACACCTCGTCGCGTCGCGTCGTCACCGGCGTGAAGATGGTCGGGCCAGGCCTCTACACCGAGATCGGCAAGAAGACCAGGGgtgggtatcc ... ttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
                                       ttcgctttttccgc  CT-rich tract
                          ttattgtt  TA-rich tract