Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactagcccttaatgattatttgatcaaaaactcaacactagctgcttcagatgagaaatgtcactggtgataacacctctttttcatcatcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGAATGGGCTGCCAATTTGGCTCTTGCTG

Basic information

species Zea mays
transcript GRMZM2G150251_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32797772|gb|CD950008.1|CD950008
EST:     GATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|32803071|gb|CD955307.1|CD955307
EST:     GATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211139847|gb|FK978968.1|FK978968
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|32796372|gb|CD948608.1|CD948608
EST:     GATCCGGTGACTGACCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138918|gb|FK978966.1|FK978966
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138912|gb|FK978960.1|FK978960
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|78123105|gb|DV541489.1|DV541489
EST:     CGGGGTCGACAACAGCTCAAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAAATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211139849|gb|FK978970.1|FK978970
EST:     GGGGTCGACAACAGCTCGAGATCCGGTGACTGATACTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GGGGTCGACAACAGCTCGAGATCCGGTGACTGAT-CTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|93282675|gb|EB674939.1|EB674939
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211139848|gb|FK978969.1|FK978969
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138916|gb|FK978964.1|FK978964
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|76020573|gb|DT947743.1|DT947743
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138913|gb|FK978961.1|FK978961
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138914|gb|FK978962.1|FK978962
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|91870069|gb|EB400685.1|EB400685
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|30031840|gb|CB833691.1|CB833691
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|60349110|gb|DN216083.1|DN216083
EST:     CGGGGTCAACAGCAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138919|gb|FK978967.1|FK978967
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|32800677|gb|CD952913.1|CD952913
EST:     GATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138917|gb|FK978965.1|FK978965
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|76282341|gb|DV021909.1|DV021909
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcagatgagaaatgtcactggtgataacacctctttttcatcatcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGAATGGGCTGCCAATTTGGCTCTTGCTG
                        tgataac  putative branch site (score: 2)
                                cctctttttcatcatc  CT-rich tract
                                    tttttcat  TA-rich tract