Sequence
atgc intronic sequence ATGC exonic sequence...tatgaatgtagagtattatagtttctatattaaacattcccttatacaaactaaagtgatagctaatctcactcaaactattcattctggtttctcgcagATTTTTGATGGACACAATGGCTCTTTAGCTGCCATATACACACGGGAGAATCTAATAAACAATGTGCTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G150213_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g27780.1 (Oryza sativa), 3'ss of exon 1
---tatgaatgtagagtattatagtttctatattaaacat-tcccttatacaaactaaagtgatagctaatctcactcaaactattcattctggtttctcg-cagATTTTTGATGGACACAATGGCTCTTTAGCTGCCATATACACACGGGAGAATCTAATAAACAATGTGCTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
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aactatgagtctc-actattttgtttcgatttttaaacttgtgtgttataacaactgaagtggccactgatcttg----aattatttatcctgtcttctcttcagATCTTCGATGGCCACAATGGATCTGCGGCTGCCATATACACCAGGGAGAACCTCTTGAACAATGTGTTGGCTGCTATTCCCCCAAATCTTACAAGTGAGG
upper sequence: GRMZM2G150213_T04 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g10700.t01 (Vitis vinifera), 3'ss of exon 2
tatgaatgtagagtattatagtttctatattaa-acattcccttatacaaactaaagtgatagctaatctcactcaaactattcattctgg----tttctcgcagATTTTTGATGGACACAATGGCTCTTTAGCTGCCATATACACACGGGAGAATCTAATAAACAATGTGCTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
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-----atctattgttgcttatatctcatatttacacaacagtttctatatgataatatatatgtgtatttttggtaggtggatcttactaaacctttttttgcagCTATTTGATGGACATAATGGATCTGCAGCTGCTATATACTCAAAAGAGAATCTTCTAAACAATGTTTTAGCTGCTATTCCTCCAGAACTTAGCAGAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaaactaaagtgatagctaatctcactcaaactattcattctggtttctcgcagATTTTTGATGGACACAATGGCTCTTTAGCTGCCATATACACACGGGAGAATCTAATAAACAATGTGCTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
tttctcgc CT-rich tract
aaactatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgaatgtagagtattatagtttctatattaaacattcccttatacaaactaaagtgatagctaatctcactcaaactattcattctggtttctcgcagATTTTTGATGGACACAATGGCTCTTTAGCTGCCATATACACACGGGAGAATCTAATAAACAATGTGCTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT