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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttgtttcttaaagtaggaaactttattcagggctgttgtggtctcattagttcttattccctaaggccgaagccctttttttctttctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAGTTCACTGTTGGTAAATTCTTGAGCCTGTTGATGGTTTCTGGCTTATTGT

Basic information

species Zea mays
transcript GRMZM2G150201_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150201_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g11850.1 (Oryza sativa), 3'ss of exon 1
------------ttttttgtttcttaaagtaggaaactttattcagggctgttgtggtctcattagttcttattccctaaggccgaagccctttttttctttctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAGTTCACTGTTGGTAAATTCTTGAGCCTGTTGATGGTTTCTGGCTTATTGT
            ||||    |||||  | |  |||| |||  | |    | || |  | |  ||| ||||| || | ||| |         ||| ||| ||||  | || ||||||     ||| |  ||  ||| || || ||||| ||||| |||||||||||||||||||| ||||| ||||| || || |||||||||||| || | |
tcataacagttgttttcgacttcttgcaatgtgaaatttttattaa---ttttttaatgtgtttatttcttctttcgtaatg---------tttatttatttccctatgcagATGGCCTCTCAGGCTCTGTTTACCAATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCTTTTAATGGTTTCTGGCGTAATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110441|gb|DV528853.1|DV528853
EST:     CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAG                         ATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
genomic: CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAGgtgcggcgcc ... ctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
EST: gi|211344010|gb|FL298277.1|FL298277
EST:     CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAG                         ATGGTTCTACAGTTCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
genomic: CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAGgtgcggcgcc ... ctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
EST: gi|211344009|gb|FL298276.1|FL298276
EST:     CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAG                         ATGGTTCTACAGTTCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
genomic: CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAGgtgcggcgcc ... ctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
EST: gi|71446990|gb|DR828040.1|DR828040
EST:     CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAG                         ATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
genomic: CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAGgtgcggcgcc ... ctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
EST: gi|101399104|gb|EB821425.1|EB821425
EST:     CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAG                         ATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG
genomic: CTGGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGGTCTCGCCTCAAGgtgcggcgcc ... ctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcattagttcttattccctaaggccgaagccctttttttctttctttttgtagATGGTTCTACAGTCCTTGGCTACTAACAGAAGCAAATACCATTGTGGAAAGTTCACTGTTGGTAAATTCTTGAGCCTGTTGATGGTTTCTGGCTTATTGT
                               ccctttttttctttct  CT-rich tract
                                  tttttttctttctttt  TA-rich tract