1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctgaggttgtcagccatggaaaactggtatctaatgagataaacataaatcttctgtcagtttttttttattgtgttgtctgtatgcttcttttccagCTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATAAATCTGCTGTCAAGACGTCTGGAAGAGGGAGAGGAAAAGGGTGAATTGG
species | Zea mays |
transcript | GRMZM2G150014_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCC-ACAAG CTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATAEST: gi|15632388|gb|BI679481.1|BI679481
genomic: GCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatca ... tcttttccagCTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATA
EST: GCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAG CTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATAEST: gi|101388897|gb|EB816430.1|EB816430
genomic: GCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatca ... tcttttccagCTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATA
EST: GCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAG CTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATA
genomic: GCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatca ... tcttttccagCTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATA
cataaatcttctgtcagtttttttttattgtgttgtctgtatgcttcttttccagCTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATAAATCTGCTGTCAAGACGTCTGGAAGAGGGAGAGGAAAAGGGTGAATTGG
tatgcttcttttcc CT-rich tract
tttttttttattgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgaggttgtcagccatggaaaactggtatctaatgagataaacataaatcttctgtcagtttttttttattgtgttgtctgtatgcttcttttccagCTTGCTGAGATTGTCAATCATGGAAAACTGGTGTCTGATGAGATCATCATAAATCTGCTGTCAAGACGTCTGGAAGAGGGAGAGGAAAAGGGTGAATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA