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gtgcatacagagtggcattactataatttggactctcattatttattttgtgttgtttagtctgaaatataaaaacatgtgtttttttgcttgtatggcttataaggtgttgttgcttcttgcagCTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTGCTCTCAAAGCCTGCCAAGGGTGTGGAGAAGGGATTCCCTCTTCTTTCCC
species | Zea mays |
transcript | GRMZM2G149751_T06 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGGATTCCCAGTTTAGTGTATTTTCCTATGCCATAAGCAGAG CTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTGEST: gi|211061355|gb|FL332106.1|FL332106
genomic: GAAAAGGATTCCCAGTTTAGTGTATTTTCCTATGCCATAAGCAGAGgtgcatacag ... cttcttgcagCTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTG
EST: GAAAAGGATTCCCAGTTTAGTGTATTTTCCTATGCCATAAGCAGAG CTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTG
genomic: GAAAAGGATTCCCAGTTTAGTGTATTTTCCTATGCCATAAGCAGAGgtgcatacag ... cttcttgcagCTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTG
aaaaacatgtgtttttttgcttgtatggcttataaggtgttgttgcttcttgcagCTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTGCTCTCAAAGCCTGCCAAGGGTGTGGAGAAGGGATTCCCTCTTCTTTCCC
ttgcttctt CT-rich tract
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatacagagtggcattactataatttggactctcattatttattttgtgttgtttagtctgaaatataaaaacatgtgtttttttgcttgtatggcttataaggtgttgttgcttcttgcagCTCGGTGTTGATACCGTGCCAGTACTTGTTGGACCAGTCTCGTACCTGTTGCTCTCAAAGCCTGCCAAGGGTGTGGAGAAGGGATTCCCTCTTCTTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA