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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG

Basic information

species Zea mays
transcript GRMZM2G149751_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g42884.1 (Oryza sativa), 3'ss of exon 1
agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG----
   ||     ||||| | |       ||||   ||  |  ||||   ||   |  | | ||       |    ||||  ||| | | |||  |   | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||    
--gatatgtgtaatcttgttagctaaatcat--aattttcgtatgtattcacatgacatttcgatgaatcaaactgatcgtagtacaattgtttctatagaaagATGGCGTCTCACATTGTTGGATACCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCCCTGGAGTCTTTCTGGGATGGGAAGAGCAGCGCTGAGGATT

upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g42884.3 (Oryza sativa), 3'ss of exon 1
---agcatgaccttaatcatatcgttctcatcaata----aacatctgtattccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
   |||||     ||    ||   || | | | | |    ||  |  ||||   ||   |  | | ||       |    ||||  ||| | | |||  |   | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||
gttagcatatggatatgtgtaatcttgttagctaaatcataattttcgtatgtattcacatgacatttcgatgaatcaaactgatcgtagtacaattgtttctatagAAAGATGGCGTCTCACATTGTTGGATACCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCCCTGGAGTCTTTCTGGGATGGGAAGAGCAGCGCTGAG

upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g42884.2 (Oryza sativa), 3'ss of exon 1
--agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
   | ||     ||||| | |       ||||   ||  |  ||||   ||   |  | | ||       |    ||||  ||| | | |||  |   | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||
tatggatatgtgtaatcttgttagctaaatcat--aattttcgtatgtattcacatgacatttcgatgaatcaaactgatcgtagtacaattgtttctatagAAAGATGGCGTCTCACATTGTTGGATACCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCCCTGGAGTCTTTCTGGGATGGGAAGAGCAGCGCTGAG

upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S33_110V6.1 (Physcomitrella patens), 3'ss of exon 1
agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttga-catggtatttctgactgtaattctatttatggcacagAAA-GATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
 | |    |||   || |   ||||  |  ||  |    ||       |  || | || ||   |||   || |||  ||||   |   ||| ||   |||||| |||||| |||||| | ||||||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||| |||| |   ||||  
cggacacgcttgtccagaattttcttgt-gatgcattgatggtgcggatactaaactatttactcatcagatatcttcctgtgtattcgtttctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGAGCTCAAGTTCGCTCTAGAGTCGATGTGGGATGGCAAGACCCAGGCTGC-

upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S33_110V6.2 (Physcomitrella patens), 3'ss of exon 1
---agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttga-catggtatttctgactgtaattctatttatggcacagAAA-GATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
    | |    |||   || |   ||||  |  ||  |    ||       |  || | || ||   |||   || |||  ||||   |   ||| ||   |||||| |||||| |||||| | ||||||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||| |||| |   ||    
tgacggacacgcttgtccagaattttcttgt-gatgcattgatggtgcggatactaaactatttactcatcagatatcttcctgtgtattcgtttctgcagCAGAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGAGCTCAAGTTCGCTCTAGAGTCGATGTGGGATGGCAAGACCCAGGC----

upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S27_81V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttgacatggtatttctgactgtaa----ttctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
                   ||||    || | |  ||  ||  | |     || ||   ||     | | |   ||   || || || |  ||| ||| |     |  || |||   || | ||  ||||| |||||| | || |||||||| || ||||||||||||||||||||||| || ||  | |||||| | ||||                    
acatggaaatggtagaattgcatcttattcacctgatgattagcgtgtgcgaatattcatacgatctctcaggctaacagaaattgt-tcactgtctgcagACGTTCTTAGTTAAATCATA-AACCATGGCTTCCCACGTAGTCGGATACCCCCGGATGGGCCCCAAGAGGGAGCTCAAATTCGCCTTGGAGTCTATGTGGG--------------------

upper sequence: GRMZM2G149751_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S399_19V6.3 (Physcomitrella patens), 3'ss of exon 1
---------agcatg-accttaatcata---tcgttctcatcaataaacatctgtattccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
          | | | | || ||| ||    | || |   ||  |    ||| | |        ||   | |||| | |  | | |   ||     |   |   ||  || ||||  ||| | || ||| | |||||||| || |||||||||||||||||||||||||||||||| ||||||||  | |||||||| |||| |         
gtggtttagtgtacgtaactgaatgatgcgttggtgcatctcgttcggtatc-gaaccgaggtatatcttcgttggc-taatgtgttgcacctc--tctcacagATTTCA-AGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCTCTTGAGTCGATGTGGGATGGCAAGACCC--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211004701|gb|FL002831.1|FL002831
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927822|gb|CF032634.1|CF032634
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927851|gb|CF032663.1|CF032663
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927265|gb|CF032077.1|CF032077
EST:     TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGCCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211010249|gb|FL002854.1|FL002854
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007467|gb|FL002836.1|FL002836
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927533|gb|CF032345.1|CF032345
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|5268947|gb|AI770911.1|AI770911
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|9742888|gb|BE519036.1|BE519036
EST:     CTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211013032|gb|FL002871.1|FL002871
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|5566808|gb|AI881674.1|AI881674
EST:     ATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: ATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|87151948|gb|DY396737.1|DY396737
EST:     TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007476|gb|FL002845.1|FL002845
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211004693|gb|FL002823.1|FL002823
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|33102239|gb|CF062199.1|CF062199
EST:     TCCTCACCTATCCTCGCCGTTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGG
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211015811|gb|FL002884.1|FL002884
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211004696|gb|FL002826.1|FL002826
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927444|gb|CF032256.1|CF032256
EST:     TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211013023|gb|FL002862.1|FL002862
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927811|gb|CF032623.1|CF032623
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211013025|gb|FL002864.1|FL002864
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211015801|gb|FL002874.1|FL002874
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211010242|gb|FL002847.1|FL002847
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211010246|gb|FL002851.1|FL002851
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|148962844|gb|EE013765.2|EE013765
EST:     TGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211010252|gb|FL002857.1|FL002857
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007473|gb|FL002842.1|FL002842
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211015810|gb|FL002883.1|FL002883
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32928003|gb|CF032815.1|CF032815
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCTACATTGGTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|33101700|gb|CF061660.1|CF061660
EST:     TCCTCACCTATCCTCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007469|gb|FL002838.1|FL002838
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211010243|gb|FL002848.1|FL002848
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211010245|gb|FL002850.1|FL002850
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927945|gb|CF032757.1|CF032757
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211013031|gb|FL002870.1|FL002870
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927261|gb|CF032073.1|CF032073
EST:     TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|5555424|gb|AI881375.1|AI881375
EST:     CTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007465|gb|FL002834.1|FL002834
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927611|gb|CF032423.1|CF032423
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211004695|gb|FL002825.1|FL002825
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211015803|gb|FL002876.1|FL002876
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211013030|gb|FL002869.1|FL002869
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007466|gb|FL002835.1|FL002835
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927189|gb|CF032001.1|CF032001
EST:     TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCTACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007470|gb|FL002839.1|FL002839
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927476|gb|CF032288.1|CF032288
EST:     TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32928056|gb|CF032868.1|CF032868
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211013034|gb|FL002873.1|FL002873
EST:     TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: TCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|32927887|gb|CF032699.1|CF032699
EST:     CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGGTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: CGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
EST: gi|211007464|gb|FL002833.1|FL002833
EST:     ACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGG                         AAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA
genomic: ACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3117

TATAAATAAGCCCTCCCAAACCCCTTCCATTTCCCGTGCTCCTCTCCTCCTCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 4704

TATAAATAAGCCCTCCCAAACCCCTTCCATTTCCCGTGCTCCTCTCCTCCTCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3173

TATAAATAAGCCCTCCCAAACCCCTTCCATTTCCCGTGCTCCTCTCCTCCTCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 4206

TATAAATAAGCCCTCCCAAACCCCTTCCATTTCCCGTGCTCCTCTCCTCCTCCTCACCTATCATCGCCGCTGCGCCGTCTCCTCCGCTCCCGTCGTCCGGgtaagcaacc ... tatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG
                          ttctgac  putative branch site (score: 4206)
                                      ttctattt  putative PPT
                                 tgtaattctatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agcatgaccttaatcatatcgttctcatcaataaacatctgtattccttgttacaatagttgacatggtatttctgactgtaattctatttatggcacagAAAGATGGCGTCCCACATTGTTGGATACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCACTTGAGTCTTTCTGGGATGGGAAGAGCACCGCTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
-gcatgac
- - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga