1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaatgcatgagctcgccgccgtttccttgtcccgtgacgagctacgtgtgcgcagtggctcccgctctagctagctgcctgctgtagcagagagtctctaggccaggctcgttctcacctttgttgtgcattattgtgcctgtgtgatgtgtgtgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGCTGAGCGGCATACTGTTCCAGCTCCTGTACGGGCTGATGGGCAGCTGGA
species | Zea mays |
transcript | GRMZM2G149481_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAG GTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGEST: gi|76289720|gb|DV029288.1|DV029288
genomic: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAGgtgaatgcat ... tgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
EST: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAG GTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGEST: gi|71443461|gb|DR824511.1|DR824511
genomic: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAGgtgaatgcat ... tgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
EST: ACGGCGGCTCGGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAG GTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGEST: gi|211233606|gb|FL371001.1|FL371001
genomic: ACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAGgtgaatgcat ... tgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
EST: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAG GTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGEST: gi|91878598|gb|EB408555.1|EB408555
genomic: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAGgtgaatgcat ... tgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
EST: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAG GTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGEST: gi|94475285|gb|EB704243.1|EB704243
genomic: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAGgtgaatgcat ... tgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
EST: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAG GTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
genomic: GGCACGGCGGCTCCGCCTACGACGCTTGGTTCAGCTGCGCGTCCAACCAGgtgaatgcat ... tgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATG
tcgttctcacctttgttgtgcattattgtgcctgtgtgatgtgtgtgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGCTGAGCGGCATACTGTTCCAGCTCCTGTACGGGCTGATGGGCAGCTGGA
ttctcac putative branch site (score: 8)
attattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgcatgagctcgccgccgtttccttgtcccgtgacgagctacgtgtgcgcagtggctcccgctctagctagctgcctgctgtagcagagagtctctaggccaggctcgttctcacctttgttgtgcattattgtgcctgtgtgatgtgtgtgttcatcagGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGCTGAGCGGCATACTGTTCCAGCTCCTGTACGGGCTGATGGGCAGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA