1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactgcagttctatcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
species | Zea mays |
transcript | GRMZM2G149238_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCA GAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATEST: gi|78084017|gb|DV512410.1|DV512410
genomic: CAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccg ... ttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAAT
EST: CAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCA GAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATEST: gi|32792922|gb|CD945158.1|CD945158
genomic: CAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccg ... ttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAAT
EST: GATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCA GAATATTGTATCAACAGTTA
genomic: GATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccg ... ttcatgacagGAATATTGTATCAACAGTTA
gtttactgcagttctatcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
tgttgac putative branch site (score: 131)
ttatttc CT-rich tract
attatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactgcagttctatcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA