Sequence
atgc intronic sequence ATGC exonic sequence...ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactgcagttctatcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149238_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 3'ss of exon 1
ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactg----cagttctatcatggtctacttgacatgttgacat-tatttc-atgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
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------catgtgttccactctgttttggcttatcatgcttcctttggatactctcaccaaggaaattgaagtcctcattatgtgttctcatctattttgatggcagAAACATCGTGTCGACGGTCAATTTGGATTGCAAATTAGACCTCAAAGCTATAGCTTTGCAAGCACGCAATGCAGAATATAATCCAAAG
upper sequence: GRMZM2G149238_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 3'ss of exon 1
ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactg----cagttctatcatggtc--tacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
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------catgtgtcccactctgtttaagcttatgattcttcctttggttacactcatcagtgaaattgtggtccttattatgcattctcttttattttgatggcagAAACATCGTATCGACGGTCAATTTGGATTGCAAATTAGACCTCAAAGCTATAGCTTTGCAAGCTCGCAATGCAGAATATAATCCAAAG
upper sequence: GRMZM2G149238_T04 (Zea mays), 3'ss of exon 1
lower sequence: AT1G55520.1 (Arabidopsis thaliana), 3'ss of exon 2
ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactgcagttct--atcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
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-----gtgagttctctcttttgtgtctctgttttaagattctga-gtttg-tgcttttgtgaatcacaagatcttacctttttcttttttggtttgtttcagAAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCATAGCTTTGCAAGCTAGGAATGCTGAATATAACCCCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32792922|gb|CD945158.1|CD945158EST: GATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCA GAATATTGTATCAACAGTTA
genomic: GATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccg ... ttcatgacagGAATATTGTATCAACAGTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttactgcagttctatcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
tgttgac putative branch site (score: 3)
ttatttc CT-rich tract
attatttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctacaataaaaatcctatgttgcttttacaaaacaaaatccacatgtttactgcagttctatcatggtctacttgacatgttgacattatttcatgacagGAATATTGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCAAGAAATGCGGAGTATAACCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA