1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cccttaactttttgttcatgaattattctaaattctgctcgttcagagagatcgtcagaccctatgccacacttgatgttttatttccttgttgagatagGTTTCGGAAGTAAGCTCAATTCTGGGTAGAGCTAGTACTGCTGGCCTTGGAAAAGCAGTGGAAGTGCTTGATACACTTGGCAGTAGCATGACAGATTTGA
species | Zea mays |
transcript | GRMZM2G148773_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gagagatcgtcagaccctatgccacacttgatgttttatttccttgttgagatagGTTTCGGAAGTAAGCTCAATTCTGGGTAGAGCTAGTACTGCTGGCCTTGGAAAAGCAGTGGAAGTGCTTGATACACTTGGCAGTAGCATGACAGATTTGA
acttgat putative branch site (score: 60)
ttttatttccttgtt CT-rich tract
ttgatgttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttaactttttgttcatgaattattctaaattctgctcgttcagagagatcgtcagaccctatgccacacttgatgttttatttccttgttgagatagGTTTCGGAAGTAAGCTCAATTCTGGGTAGAGCTAGTACTGCTGGCCTTGGAAAAGCAGTGGAAGTGCTTGATACACTTGGCAGTAGCATGACAGATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - -gttcatg
- - - - - - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgcc