Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaccctaaaccatccagccgcgtgcgaggtcgccgctcgatttgactgatctccatgcttccccttttgtgggttccccctttctctgtgcgcatggttgcgcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGGCAGGTCAACCCGCCCGCCGGCTTCGAGCACAGGGTCACCGACAACCTCC

Basic information

species Zea mays
transcript GRMZM2G148130_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148130_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 1
gtaataaaccctaa-----accatccagccgcgtgcgaggtcgccgctcgatttga-ctgatctccatgc---ttcccc--------ttttgtggg-----ttccccctttctc-----------tgtgcgcatggttgcgcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGGCAGGTCAACCCGCCCGCCGGCTTCGAGCACAGGGTCACCGACAACCTCC
|||  |||||||||     |||  |    | |   |    || || |  |||   | ||   ||||   |   ||| ||        ||||| |||     ||| | || ||||           |||| |  |   || |  ||| ||||  |||||||||||||| ||||  || ||||||||||||||  ||||||||||||||||||| ||| |||||||| |||||| |||||||||||| ||||
gtaccaaaccctaaccctaaccccctcctctctaccctcatcccctccggatcccatctcccctccgccccgattcgccgtaatttgttttgggggtttttttctctctctctctgagctgtttgtgtgtgtgtatgtgtgttcgtgcagGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757762|gb|DY541903.1|DY541903
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|89248069|gb|DY619855.1|DY619855
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|93282265|gb|EB674529.1|EB674529
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|76289947|gb|DV029515.1|DV029515
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|211173761|gb|FK993090.1|FK993090
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCCTCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|78092977|gb|DV521351.1|DV521351
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGGTTGCGCGCGTTCAG           
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGT--C---------C-CG-G--AAGgtaataaacc
EST: gi|78115400|gb|DV533788.1|DV533788
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|94476524|gb|EB705482.1|EB705482
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|86475097|gb|DY241467.1|DY241467
EST:     CCCGGGGCGGGATGGGGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCGGGCGCCTGCAAAAGGAGCTAACGGAGGGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|76012087|gb|DT939257.1|DT939257
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG