1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaggactccgcacgcgacgcgtcaaggcttttttcttttgattctttttttgtctcatcatataagatgaactaatcgaataatctacgccactataacatccagtaatataacttgtgatacttttgtggatgcagTCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG
species | Zea mays |
transcript | GRMZM2G148056_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGACCGCGCCATCGTCACCGCGCTCCTCCGGCGCTCCAAGTACAGAG TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCGEST: gi|148935412|gb|EC879456.2|EC879456
genomic: CGTCGACCGCGCCATCGTCACCGCGCTCCTCCGGCGCTCCAAGTACAGAGgtgaggactc ... gtggatgcagTCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG
EST: CAAGTACAGAG TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGGCTCGEST: gi|148961641|gb|EE012410.2|EE012410
genomic: CAAGTACAGAGgtgaggactc ... gtggatgcagTCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACT-GGGCTCG
EST: CGTCGACCGCGCCATCGTCACCGCGCTCCTCCGGCGCTCCAAGTACAGAG TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG
genomic: CGTCGACCGCGCCATCGTCACCGCGCTCCTCCGGCGCTCCAAGTACAGAGgtgaggactc ... gtggatgcagTCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG
atctacgccactataacatccagtaatataacttgtgatacttttgtggatgcagTCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG
atataac putative branch site (score: 44)
cttttgt putative PPT
taatataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggactccgcacgcgacgcgtcaaggcttttttcttttgattctttttttgtctcatcatataagatgaactaatcgaataatctacgccactataacatccagtaatataacttgtgatacttttgtggatgcagTCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT