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...gaagtttccatgtttgacagctcaaatctttgttggctctgttcgtaaaaaagctctgtatcatactcttcttcctgaaaacaatgtttttatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAGAGTTCATGGATGAAGTTTTTGCCCAGAGCAAGAAGTTCTTTGACCTTC
species | Zea mays |
transcript | GRMZM2G147882_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|211210380|gb|FL427965.1|FL427965
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|211498686|gb|FL368195.1|FL368195
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|88756322|gb|DY540463.1|DY540463
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|74241070|gb|DT648984.1|DT648984
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|78117759|gb|DV536146.1|DV536146
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|211054808|gb|FL419520.1|FL419520
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCWGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|78078284|gb|DV506699.1|DV506699
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|88756286|gb|DY540427.1|DY540427
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|93014970|gb|EB640490.1|EB640490
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|211054809|gb|FL419521.1|FL419521
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|71299023|gb|DR785502.1|DR785502
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|71429426|gb|DR810476.1|DR810476
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|50323931|gb|CO519057.1|CO519057
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAEST: gi|211382338|gb|FL400551.1|FL400551
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
EST: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAG GCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
genomic: TCAGCCTGGCGGACCCGAACGTCCAGAAATCAGTGGCGCTCCTCAAGCAGgtccgcggtt ... tatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAA
taaaaaagctctgtatcatactcttcttcctgaaaacaatgtttttatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAGAGTTCATGGATGAAGTTTTTGCCCAGAGCAAGAAGTTCTTTGACCTTC
tttttattt CT-rich tract
aaaacaatgtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtttccatgtttgacagctcaaatctttgttggctctgttcgtaaaaaagctctgtatcatactcttcttcctgaaaacaatgtttttatttggtagGCATGCCTGGATTCAGGCTTCTTCTATGTTGTGGATCATGGGATAAGCCAAGAGTTCATGGATGAAGTTTTTGCCCAGAGCAAGAAGTTCTTTGACCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT