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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG

Basic information

species Zea mays
transcript GRMZM2G147791_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
-------------------------gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-
                          | || |  ||||| ||    | ||   |  ||| ||||| |||  |  |      |   |    ||  | || ||||   | | |||  | | || |||  || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||| 
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttat-cgatcttcgttttcttcccctgattcctgatttttttcgtttg-ttcgtcgtct-ttg--aagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G03550.2 (Glycine max), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------
       | ||| |||  | | |||   | | | ||       |   ||  |    | | ||     | |  |  |  || |||||     |   |   | ||| ||||| ||||||||||||||||| || ||||||||||| | |||||| || ||||| ||||| || || || ||| | || |||||            
-------gttcgctct-gtgcaaattc-tctaacttgttctcactttgttgatttcctcttc-----atttcg--taacattttgtgcattgaatt---gcagAGATGGCAAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCATAAGAATGGCATCAAAAAGCCAAAGAGGCATCGCCACACTTCCACCAA

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------
       | ||| |||  ||  |||   | | |    |||  | ||  |       |  |||   | | | |   |  || | |||     |   |   | ||| ||||| ||||||||||||||||| || ||||||||||| | |||||| |||||||| ||||| || || || ||| | ||||||||            
-------gttcgctctgttc--aatttctctaac--acgttcttactttt---ttgctgctctcttcattgt--cttacattgtgtgcattgaatt---gcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G04280.1 (Glycine max), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgtgattttcgtctt-caccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------
|  |    ||  |  |  |   |       |  || |  | ||   |  |    |    | ||   |  |   |  |   | ||| |  ||         | ||| ||||| ||||||||||| ||||| || ||||| ||||| | |||||| ||||| |||||||| |||||||||||| | || |||||            
gttcgtttcttcaatttctgtgacaaaaaattcttctaattttgtgctttttttctgttcttctcttcccatcgtcttttaatttttgtgccacttgattgcagAGATGGCAAAGTCGAAGAATCACACAGCACACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAA

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G06680.1 (Arabidopsis thaliana), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtg----tgattttcgtcttcaccgtcaac--ccacccctccacttactctgattcgcactttgttggcagGCATCCGGA-AGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG
|    | |||  || ||   || |||| ||    | ||||   | || ||  |   |        |     | | |  | ||   |  ||||     | | |    | ||||||||| || |||||||| |||||||||||||| |||||   ||||||||| |||||||| || ||||| || | |            
gttagctgctt-atatccggctgatcgctggatataatttgacttttaactcttctcgtttgtttcgttggtgattgagtttgaaaagTTGTGTTGTGCCGTTGTTACAGAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGA-----------

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G06700.3 (Arabidopsis thaliana), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgt-gattttcgtcttcaccgtcaacccacccctccact---tactctgattcgcactttgt-tggcagGCATCCGGA--AGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-------------
       | | | | |  |  ||      |  ||| |  | |||||   ||  ||      | |  |   || ||   |    | ||||| | |  | | |  |    ||| ||||||||||||||||| ||||||||||| |||||||||   || || ||||||||||| || ||||| || | | | ||||| ||              
-------gttagcttttcttatatctacggccgatctctggcttcatt-tccccctgttgtttcgttcgttattcaattgaatagtttgtattgtggtcttgtgtctcagagATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAG

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G06680.3 (Arabidopsis thaliana), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtg----tgattttcgtcttcaccgtcaac--ccacccctccacttactctgattcgcactttgttggcagGCATCCGGA-AGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------
|    | |||  || ||   || |||| ||    | ||||   | || ||  |   |        |     | | |  | ||   |  ||||     | | |    | ||||||||| || |||||||| |||||||||||||| |||||   ||||||||| |||||||| || ||||| || | | | ||||| ||            
gttagctgctt-atatccggctgatcgctggatataatttgacttttaactcttctcgtttgtttcgttggtgattgagtttgaaaagttgtgttgtgccgttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAG

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G06700.1 (Arabidopsis thaliana), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgt-gattttcgtcttcaccgtcaacccacccctccact---tactctgattcgcactttgt-tggcagGCATCCGGA--AGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------
       | | | | |  |  ||      |  ||| |  | |||||   ||  ||      | |  |   || ||   |    | ||||| | |  | | |  |    ||| ||||||||||||||||| ||||||||||| |||||||||   || || ||||||||||| || ||||| || | | | ||||| ||            
-------gttagcttttcttatatctacggccgatctctggcttcatt-tccccctgttgtttcgttcgttattcaattgaatagtttgtattgtggtcttgtgtctcagAGATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAG

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0005g01340.t01 (Vitis vinifera), 3'ss of exon 1
gcacc-ccgctcgatctcatcctaat-cggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG---------
| ||  || ||  ||||  |  |||  ||  |   |||| |    || | |||    |  | ||||||| |  ||          ||| ||             |||||||| ||||||||||||||||| || ||||||||||| | ||| || |||||||| || || |||||||||      ||||||||          
gtacagcctctgcatcttttggtaaaacgacgccgtttttgctcccatc-tcactgaattcttccactttcaatg---------ctgtagG-------------GAAATGGCGAAGTCGAAGAACCACACTGCCCACAACCAGTCCTACAAAGCCCACAAGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACC

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S79_253V6.2 (Physcomitrella patens), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgc-actttgttggcagGCATCCGGAAG---AAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG--------
      |  | | |   |   |    | ||||      |        ||       || ||     |    |||||  |   ||| |  |  |   |   | ||   | ||||| ||||| ||||||||||| |||||||||||||| | ||||   |||||||| || || |||||    |||   ||     |         
----agcaatagtttctagtgtggcagctgtggccccagggactggtgttgttgttcctctgtcggtgtcttgattgactgatttttctgtggttttgtagcagGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTCAAG

upper sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S79_253V6.1 (Physcomitrella patens), 3'ss of exon 1
gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgc-actttgttggcagGCATCCGGAAG---AAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----
   |  |  | | |   |   |    | ||||      |        ||       || ||     |    |||||  |   ||| |  |  |   |   | ||   | ||||| ||||| ||||||||||| |||||||||||||| | ||||   |||||||| || || |||||    |||   ||     |      
-tgcagcaatagtttctagtgtggcagctgtggccccagggactggtgttgttgttcctctgtcggtgtcttgattgactgatttttctgtggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211538564|gb|FL475998.1|FL475998
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211383531|gb|FL339773.1|FL339773
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211150846|gb|FL322005.1|FL322005
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211325274|gb|FL366946.1|FL366946
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211492233|gb|FL339929.1|FL339929
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211507613|gb|FL326176.1|FL326176
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211388269|gb|FL318322.1|FL318322
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211389172|gb|FL356631.1|FL356631
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAAC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAAC
EST: gi|211052328|gb|FL436712.1|FL436712
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211475719|gb|FL353041.1|FL353041
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211537098|gb|FL312469.1|FL312469
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211339946|gb|FL330963.1|FL330963
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211475718|gb|FL353040.1|FL353040
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211347546|gb|FL350552.1|FL350552
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCYATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAWATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211030698|gb|FL437892.1|FL437892
EST:     CCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAMGAAATGGCCAAGTCGWAGAACCACACGGCGCACAACCAGTC
genomic: CCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211532310|gb|FL356752.1|FL356752
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211229189|gb|FL350921.1|FL350921
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211317795|gb|FL309522.1|FL309522
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211224670|gb|FL333928.1|FL333928
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211093781|gb|FL335572.1|FL335572
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211331437|gb|FL352903.1|FL352903
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211540054|gb|FL311055.1|FL311055
EST:     CGCCGCCAGACCATTCGTTTCTCGCCAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211040751|gb|FL336918.1|FL336918
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACC
EST: gi|211088867|gb|FL336458.1|FL336458
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211193511|gb|FL345909.1|FL345909
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|211489049|gb|FL326657.1|FL326657
EST:     CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCTGTAATTCTCAG                         GCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CGCCGCCAGACCATTCGTTTCTCGCGAGCCATCGCTTCGGTAATTCTCAGgcaccccgct ... ttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG
                                           ctttgtt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA