Sequence
atgc intronic sequence ATGC exonic sequence...gcgtatactacttgttcaattgcaaaaaaaaatcacagctaaagttttcagtgccatcatattaaactttcagtattaacaccaactttcttctcgacagGTGGTCAAACAAGCATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147726_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 3'ss of exon 3
gcgtatactacttgttcaattgcaaaaaaaaatca--cagctaaagttttca-gtgccatcatattaaactttcag------tattaacaccaactttcttctcgacagGTGGTCAAACAAGCATCAG
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-------ctgctt-ctctatgctagtgaaactttgtttgcctaatatttttatgttccttcactttaaaatatccaatttttttttaacacca-ctttcttctcaacagGTGGTCAAACAAGCATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211217104|gb|FL383487.1|FL383487EST: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCT GTGGTCAAACAAGCATCAG
genomic: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgca ... ttctcgacagGTGGTCAAACAAGCATCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcagtgccatcatattaaactttcagtattaacaccaactttcttctcgacagGTGGTCAAACAAGCATCAG
tattaac putative branch site (score: 1)
ccaactttcttctc CT-rich tract
atattaaactttcagt TA-rich tract