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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgtatactacttgttcaattgcaaaaaaaaatcacagctaaagttttcagtgccatcatattaaactttcagtattaacaccaactttcttctcgacagGTGGTCAAACAAGCATCAG

Basic information

species Zea mays
transcript GRMZM2G147726_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147726_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 3'ss of exon 3
gcgtatactacttgttcaattgcaaaaaaaaatca--cagctaaagttttca-gtgccatcatattaaactttcag------tattaacaccaactttcttctcgacagGTGGTCAAACAAGCATCAG
       || |||  || ||   |   |||  |       ||||  |||| | || || |||  ||||| | ||        | ||||||||| |||||||||| |||||||||||||||||||||||
-------ctgctt-ctctatgctagtgaaactttgtttgcctaatatttttatgttccttcactttaaaatatccaatttttttttaacacca-ctttcttctcaacagGTGGTCAAACAAGCATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211217104|gb|FL383487.1|FL383487
EST:     TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCT                         GTGGTCAAACAAGCATCAG
genomic: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgca ... ttctcgacagGTGGTCAAACAAGCATCAG
EST: gi|211301270|gb|FL181609.1|FL181609
EST:     TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCT                         GTGGTCAAACAAGCATCAG
genomic: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgca ... ttctcgacagGTGGTCAAACAAGCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagtgccatcatattaaactttcagtattaacaccaactttcttctcgacagGTGGTCAAACAAGCATCAG
                            tattaac  putative branch site (score: 1)
                                    ccaactttcttctc  CT-rich tract
             atattaaactttcagt  TA-rich tract