1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgctctagcctgcttctcttagattatattcagattatgaaagagtgaagaactccttcagcttgcctttgttgtaaggttcattcatccgtcgcctcaaaattctaatttcaccccgaatctttatttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG
species | Zea mays |
transcript | GRMZM2G147619_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTG GCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAAEST: gi|91876633|gb|EB406590.1|EB406590
genomic: TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTGgtacgctcta ... tttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
EST: CGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCCTTAAGTTTTG GCCGTCTTGTTACTGTCTGCTGTTCCACAGACGACGAATCACGAATGCTAA
genomic: CGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCC-TTAAGTTTTGgtacgctcta ... tttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
cattcatccgtcgcctcaaaattctaatttcaccccgaatctttatttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG
ttctaat putative branch site (score: 2)
tctttatttttttc putative PPT
aatctttatttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctctagcctgcttctcttagattatattcagattatgaaagagtgaagaactccttcagcttgcctttgttgtaaggttcattcatccgtcgcctcaaaattctaatttcaccccgaatctttatttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT