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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccctacccccagccggctagccccagatccgccgtcctcccttggccgcctctaacttcctccttccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG

Basic information

species Zea mays
transcript GRMZM2G147500_T05
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211122097|gb|FL004251.1|FL004251
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211122868|gb|FL004257.1|FL004257
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211122100|gb|FL004254.1|FL004254
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211123665|gb|FL004285.1|FL004285
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCNTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCG
EST: gi|76923168|gb|DV169366.1|DV169366
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124438|gb|FL004293.1|FL004293
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124442|gb|FL004297.1|FL004297
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|22715261|gb|BU197668.1|BU197668
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124431|gb|FL004286.1|FL004286
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211122877|gb|FL004266.1|FL004266
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211123651|gb|FL004271.1|FL004271
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124436|gb|FL004291.1|FL004291
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211123653|gb|FL004273.1|FL004273
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211122095|gb|FL004249.1|FL004249
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124440|gb|FL004295.1|FL004295
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|26559425|gb|CA831660.1|CA831660
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|87156724|gb|DY401513.1|DY401513
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211122101|gb|FL004255.1|FL004255
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211123664|gb|FL004284.1|FL004284
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211122098|gb|FL004252.1|FL004252
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124432|gb|FL004287.1|FL004287
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211124434|gb|FL004289.1|FL004289
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211123652|gb|FL004272.1|FL004272
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|22133783|gb|BQ833900.1|BQ833900
EST:     GCGCG-TTCGATCTCCGG                         GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG
genomic: GCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|149081286|gb|EE170399.2|EE170399
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|26558350|gb|CA830585.1|CA830585
EST:     TCT-NAGCGCGTTG-GGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
EST: gi|211123661|gb|FL004281.1|FL004281
EST:     TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGG                         GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
genomic: TCTCGAGCGCGTTGTGGCGGATGTCCTCGTCGGCGCGTTTCGATCTCCGGgtaaacccta ... tccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccccagatccgccgtcctcccttggccgcctctaacttcctccttccaatgcagGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG
                              ctctaac  putative branch site (score: 2)
                          ccgcctctaacttcct  CT-rich tract