1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accttgaagccaatcagtctatgttttgagcctcttagggaaccctgaattcacatagctctattatatctttaattttctatttccatctgttgtgcagACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCCATGGCTGACTCACCAAGGAGGCGGCACAACCTTTTGCGTGACAAGGTCC
species | Zea mays |
transcript | GRMZM2G147430_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCCTGCTCGTGGTGGTCGTCGTCATCGCTTCCCGGGCCTGAGAACTGTG ACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCCEST: gi|76292209|gb|DV031777.1|DV031777
genomic: GTCCTGCTCGTGGTGGTCGTCGTCATCGCTTCCCGGGCCTGAGAACTGTGgtatttctct ... tgttgtgcagACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCC
EST: GTCCTGCTCGTGGTGGTCGTCGTCATCGCTTCCCGGGCCTGAGAACTGTG ACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCCEST: gi|93281687|gb|EB673951.1|EB673951
genomic: GTCCTGCTCGTGGTGGTCGTCGTCATCGCTTCCCGGGCCTGAGAACTGTGgtatttctct ... tgttgtgcagACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCC
EST: GTCCTGCTCGTGGTGGTCGTCGTCATCGCTTCCCGGGCCTGAGAACTGTG ACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCC
genomic: GTCCTGCTCGTGGTGGTCGTCGTCATCGCTTCCCGGGCCTGAGAACTGTGgtatttctct ... tgttgtgcagACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCC
tgaattcacatagctctattatatctttaattttctatttccatctgttgtgcagACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCCATGGCTGACTCACCAAGGAGGCGGCACAACCTTTTGCGTGACAAGGTCC
ctttaat putative branch site (score: 48)
ttttctatttccatct CT-rich tract
tattatatctttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accttgaagccaatcagtctatgttttgagcctcttagggaaccctgaattcacatagctctattatatctttaattttctatttccatctgttgtgcagACTGTAGACTACAATTGCATCCTGAAGAATAAAATGGACCAACATGATTCCATGGCTGACTCACCAAGGAGGCGGCACAACCTTTTGCGTGACAAGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - -ccaatca
- - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - ccctgaa