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...acggtagattctgctccgtcttatgggtttagtctctcccttcagtcaccagtccgggtaggtaccttttaatgtattaacttaagagctctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGTTGATTTCTCAGAGGAAAATGGAAGAGAAGTTGCTACATTAGTTCAAAA
species | Zea mays |
transcript | GRMZM2G147191_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|211092469|gb|FL162379.1|FL162379
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|91868066|gb|EB399902.1|EB399902
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|148957626|gb|EC903733.2|EC903733
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|148941301|gb|EC886203.2|EC886203
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|71301436|gb|DR786749.1|DR786749
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|18660004|gb|BM500635.1|BM500635
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCCGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGEST: gi|101384704|gb|EB814398.1|EB814398
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
EST: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCG GGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
genomic: GCTCAAGCCCGGCATGTCGGCGCTCGTCACCGGCGGCGCCTCTGGCATCGgtaagaggcg ... ctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCG
tcaccagtccgggtaggtaccttttaatgtattaacttaagagctctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGTTGATTTCTCAGAGGAAAATGGAAGAGAAGTTGCTACATTAGTTCAAAA
tattaac putative branch site (score: 1)
ctctcttttc putative PPT
ttttaatgtattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggtagattctgctccgtcttatgggtttagtctctcccttcagtcaccagtccgggtaggtaccttttaatgtattaacttaagagctctcttttcagGGAAAGCACTTTGTATTGCTTTTGCAAGGAGGGGTTTATTTGTGACTGTCGTTGATTTCTCAGAGGAAAATGGAAGAGAAGTTGCTACATTAGTTCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - ctgctcc
- - - - - - - - - - - - - - - - - - -cccttca
- - - - - - - - - - - - - - - - - - - - - - gtcacca