1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcctcctcccacactgcttttcgttctgctcatgtactctgcctctgaacggccggcatggccagagagagagagagattgatctgtgggatggttcagGATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACATCAAGTCGAGCAACATCCTGCTGGACAGGAGGTGGAACCCGAAGGTCTCG
species | Zea mays |
transcript | GRMZM2G147051_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCTCACCTGGGACGTCCGGATGAACATCGTGCTCGGCATGGCCAAAGG GATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACATEST: gi|91876675|gb|EB406632.1|EB406632
genomic: CCGCTCACCTGGGACGTCCGGATGAACATCGTGCTCGGCATGGCCAAAGGgtgcctcctc ... gatggttcagGATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACAT
EST: CCGCTCACCTGGGACGTCCGGATGAACATCGTGCTCGGCATGGCCAAAGG GATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACATEST: gi|71315686|gb|DR794464.1|DR794464
genomic: CCGCTCACCTGGGACGTCCGGATGAACATCGTGCTCGGCATGGCCAAAGGgtgcctcctc ... gatggttcagGATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACAT
EST: CCGCTCACCTGGGACGTCCGGATGAACATCGTGCTCGGCATGGCCAAAGG GATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACAT
genomic: CCGCTCACCTGGGACGTCCGGATGAACATCGTGCTCGGCATGGCCAAAGGgtgcctcctc ... gatggttcagGATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACAT
ctgaacggccggcatggccagagagagagagagattgatctgtgggatggttcagGATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACATCAAGTCGAGCAACATCCTGCTGGACAGGAGGTGGAACCCGAAGGTCTCG
gattgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctcctcccacactgcttttcgttctgctcatgtactctgcctctgaacggccggcatggccagagagagagagagattgatctgtgggatggttcagGATCACGTACCTGCACGAGGGGCTGGAACCCAAGGTGGTGCACAGGGACATCAAGTCGAGCAACATCCTGCTGGACAGGAGGTGGAACCCGAAGGTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA