1 5' 3' | 2 5' 3' | 3 5' 3' |
...accatcaaagactacccggtttcgttgcaaccataaacaccacacacctagaacacttgatatgatgctcgatattaacctttagtttttgtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTGAGAAATTTGAGTTTAAAGCTCCAAGAGGTGGCATGTATAAGTTCTGCT
species | Zea mays |
transcript | GRMZM2G147046_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCGACCACCCAGGAATCGACCTCACG GTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTEST: gi|161591972|gb|EY961607.1|EY961607
genomic: CTCCGACCACCCAGGAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGT
EST: TCGACCACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACG GTAACGTCACCAGGTGGCAACACTGTGTACACATTGEST: gi|60339915|gb|DN206888.1|DN206888
genomic: TCGACCACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTG
EST: CACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACG GTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTEST: gi|32859851|gb|CD999532.1|CD999532
genomic: CACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGT
EST: TCGACCACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACG GTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTEST: gi|71763107|gb|DR961044.1|DR961044
genomic: TCGACCACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGT
EST: CCAGGAATCGACCTCACG GTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTEST: gi|60353926|gb|DN220899.1|DN220899
genomic: CCAGGAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGT
EST: GAATCGACCTCACG GTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTEST: gi|56461951|gb|CK986249.1|CK986249
genomic: GAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGT
EST: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACG GTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGT
genomic: TCGACCACGACATCTTCTGGAGCTCCGACCACCCAGGAATCGACCTCACGgtacacaacc ... gtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGT
acctagaacacttgatatgatgctcgatattaacctttagtttttgtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTGAGAAATTTGAGTTTAAAGCTCCAAGAGGTGGCATGTATAAGTTCTGCT
tattaac putative branch site (score: 370)
tttttgt putative PPT
tttagtttttgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accatcaaagactacccggtttcgttgcaaccataaacaccacacacctagaacacttgatatgatgctcgatattaacctttagtttttgtaaatacagGTAACGTCACCAGGTGGCAACACTGTGTACACATTGAAGGGAAAATCTGGTGAGAAATTTGAGTTTAAAGCTCCAAGAGGTGGCATGTATAAGTTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- catcaaa
- - - - - - - - - - - - - gcaacca
- - - - - - - - - - - - - - - - - - -caccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct